ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 151 1e-33
2gb|AY104402.1| Zea mays PCO137047 mRNA sequence 151 1e-33
3ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 125 8e-26
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 125 8e-26
5dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 125 8e-26
6dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 8e-26
7dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 8e-26
8ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.91
9gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 0.91
10dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 0.91
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
12dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
13dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
14gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 0.91
15gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 0.91
16gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence 40 3.6
17emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 3.6
18gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 3.6
19gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 3.6
20emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, com... 40 3.6
21dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 3.6
22gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 3.6
23gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 3.6
24gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 3.6
25gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 3.6
26gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 3.6
27gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 3.6
28gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 3.6
29gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 3.6
30emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 3.6
31dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.6
32gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 3.6
33emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 3.6
34emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 3.6
35gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 3.6
36gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 3.6 
>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  151 bits (76), Expect = 1e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                        
Query: 134  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 193
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                                        
Query: 194  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 253
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1650

                                
Query: 254  gccttggtcctgctcttgaa 273
            |||||||| |||||||||||
Sbjct: 1649 gccttggttctgctcttgaa 1630
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  151 bits (76), Expect = 1e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                        
Query: 134  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 193
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                                        
Query: 194  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 253
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1688

                                
Query: 254  gccttggtcctgctcttgaa 273
            |||||||| |||||||||||
Sbjct: 1687 gccttggttctgctcttgaa 1668
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  125 bits (63), Expect = 8e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 208
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 209  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 268
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                   
Query: 269  ttgaaga 275
            |||||||
Sbjct: 2603 ttgaaga 2597
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  125 bits (63), Expect = 8e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                           
Query: 149     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 208
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                                           
Query: 209     atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 268
               |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 6605200

                      
Query: 269     ttgaaga 275
               |||||||
Sbjct: 6605199 ttgaaga 6605193
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  125 bits (63), Expect = 8e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                         
Query: 149   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 208
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                                         
Query: 209   atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 268
             |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 39575

                    
Query: 269   ttgaaga 275
             |||||||
Sbjct: 39574 ttgaaga 39568
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  125 bits (63), Expect = 8e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 208
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 209  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 268
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                   
Query: 269  ttgaaga 275
            |||||||
Sbjct: 2603 ttgaaga 2597
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  125 bits (63), Expect = 8e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                       
Query: 149 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 208
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                                                       
Query: 209 atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 268
           |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 561

                  
Query: 269 ttgaaga 275
           |||||||
Sbjct: 560 ttgaaga 554
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 196  ccacttggccttgatcctcaccctctcgatgctctgcttca 236
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 215  accctctcgatgctctgcttcaccgtcct 243
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 57      gctcagtcaaaccagcaccac 77
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 196      ccacttggccttgatcctcaccctctcgatgctctgcttca 236
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 196   ccacttggccttgatcctcaccctctcgatgctctgcttca 236
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 196  ccacttggccttgatcctcaccctctcgatgctctgcttca 236
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     ccttggtcctgctcttgaaga 275
               |||||||||||||||||||||
Sbjct: 1878602 ccttggtcctgctcttgaaga 1878582
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     gctcagtcaaaccagcaccac 77
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tttattattaccatattatt 32
             ||||||||||||||||||||
Sbjct: 88583 tttattattaccatattatt 88564
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cccacttggccttgatcctc 214
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     gcaccacagggaagagggctgaat 94
              ||||||||||| ||||||||||||
Sbjct: 120255 gcaccacagggcagagggctgaat 120232
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>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence
          Length = 130903

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   tttattattaccatattatt 32
            ||||||||||||||||||||
Sbjct: 8611 tttattattaccatattatt 8630
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
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>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
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>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
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>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
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>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    cccacttggccttgatcctc 214
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     accagcaccacagggaagag 86
              ||||||||||||||||||||
Sbjct: 165694 accagcaccacagggaagag 165675
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 tcgcccttggtgctcttgac 195
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,898,642
Number of Sequences: 3902068
Number of extensions: 1898642
Number of successful extensions: 37216
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37129
Number of HSP's gapped (non-prelim): 87
length of query: 275
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 253
effective length of database: 17,147,199,772
effective search space: 4338241542316
effective search space used: 4338241542316
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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