ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX957239.7| Zebrafish DNA sequence from clone DKEY-173N20 in... 44 0.24
2ref|XM_714043.1| Candida albicans SC5314 hypothetical protein (C... 42 0.96
3gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome... 42 0.96
4ref|XM_641992.1| Dictyostelium discoideum hypothetical protein (... 40 3.8
5gb|AC122409.4| Mus musculus BAC clone RP24-140P18 from chromosom... 40 3.8
6gb|AC135505.15| Medicago truncatula clone mth2-24j8, complete se... 40 3.8
7emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chr... 40 3.8
8emb|AL590680.11| Human DNA sequence from clone RP11-246G15 on ch... 40 3.8
9gb|AC087620.6| Homo sapiens chromosome 8, clone RP11-35G22, comp... 40 3.8
10gb|AY224188.1| Medicago truncatula adenosylhomocysteinase (AHC1)... 40 3.8
11gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, comple... 40 3.8
12emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 3.8

>emb|BX957239.7| Zebrafish DNA sequence from clone DKEY-173N20 in linkage group 19,
             complete sequence
          Length = 182432

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 118   aatattgtaaatttcaggaaac 139
             ||||||||||||||||||||||
Sbjct: 44131 aatattgtaaatttcaggaaac 44110



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>ref|XM_714043.1| Candida albicans SC5314 hypothetical protein (CaO19_5574), mRNA
          Length = 1197

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 19  ttggaattttaaacaagcaga 39
           |||||||||||||||||||||
Sbjct: 915 ttggaattttaaacaagcaga 935



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>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence
          Length = 201483

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     ttatttttggaattttaaaca 33
              |||||||||||||||||||||
Sbjct: 125871 ttatttttggaattttaaaca 125891



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>ref|XM_641992.1| Dictyostelium discoideum hypothetical protein (DDB0189329), partial
           mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  aaagatgagcaagagatttt 76
           ||||||||||||||||||||
Sbjct: 199 aaagatgagcaagagatttt 218



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>gb|AC122409.4| Mus musculus BAC clone RP24-140P18 from chromosome 8, complete sequence
          Length = 178068

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    aacataaccaaaatcctatg 156
              ||||||||||||||||||||
Sbjct: 168149 aacataaccaaaatcctatg 168130



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>gb|AC135505.15| Medicago truncatula clone mth2-24j8, complete sequence
          Length = 124563

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aagatgagcaagagattttg 77
             ||||||||||||||||||||
Sbjct: 90149 aagatgagcaagagattttg 90130



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>emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chromosome 10, complete
              sequence
          Length = 154348

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    aaatttcaggaaacataacc 145
              ||||||||||||||||||||
Sbjct: 138423 aaatttcaggaaacataacc 138442



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>emb|AL590680.11| Human DNA sequence from clone RP11-246G15 on chromosome 6, complete
             sequence
          Length = 21388

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   atattgtaaatttcaggaaacata 142
             |||| |||||||||||||||||||
Sbjct: 12062 atatagtaaatttcaggaaacata 12039



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>gb|AC087620.6| Homo sapiens chromosome 8, clone RP11-35G22, complete sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     taaacaagcagatagttgtgagct 51
              |||||||||||| |||||||||||
Sbjct: 115267 taaacaagcagacagttgtgagct 115244



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>gb|AY224188.1| Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds
          Length = 99431

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gtttgttatttttggaattt 27
             ||||||||||||||||||||
Sbjct: 80460 gtttgttatttttggaattt 80441



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>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence
          Length = 203431

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   aacataaccaaaatcctatg 156
             ||||||||||||||||||||
Sbjct: 10203 aacataaccaaaatcctatg 10184



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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tttaaacaagcagatagttg 45
              ||||||||||||||||||||
Sbjct: 161194 tttaaacaagcagatagttg 161213


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,209,844
Number of Sequences: 3902068
Number of extensions: 3209844
Number of successful extensions: 74935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74919
Number of HSP's gapped (non-prelim): 16
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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