ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54f03 |
|---|---|
| Clone Library Name | barley_pub |
>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 628 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 245 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 84 R F++ S + + WY A I ++W +IC+AA W + + I+ + T Sbjct: 145 RTGFVEECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIET 204 Query: 83 ENHVVW 66 V++ Sbjct: 205 TGKVIY 210
>S6A19_PONPY (Q5R6J1) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 236 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 75 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWRMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 74 VVWL 63 VV++ Sbjct: 222 VVYI 225
>S6A18_RAT (Q62687) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) (Renal osmotic stress-induced Na-Cl organic solute cotransporter) (ROSIT) Length = 615 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 245 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 84 R F+Q + + WY + I + ++W +C+ A WT++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWTTVYLCVIRGIES 203 Query: 83 ENHVVW 66 V++ Sbjct: 204 TGKVIY 209
>S6A19_MOUSE (Q9D687) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 236 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 75 +++ A+ S + + WY + I ++W ++C+ W+ L + I+ + T Sbjct: 162 YVEECAKSSSVDYFWYRETLNISTSISDSGSIQWWILLCLTCAWSVLYVCIIRGIETTGK 221 Query: 74 VVWL 63 V++ Sbjct: 222 AVYI 225
>S6A19_HUMAN (Q695T7) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = -2 Query: 236 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 75 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 74 VVWL 63 V++ Sbjct: 222 AVYI 225
>S6A18_MOUSE (O88576) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 615 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 245 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 84 R F+Q + + WY + I + ++W +C+ A W+++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWSTVYLCVIRGIES 203 Query: 83 ENHVVW 66 V++ Sbjct: 204 TGKVIY 209
>REC12_SCHPO (P40384) Meiotic recombination protein rec12| Length = 345 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 213 SLSRGLDKIGTKPSRIQHHQLQSMTALAAW 302 +L G TKP I HH++ S+T+ A W Sbjct: 145 ALENGTVITATKPLLISHHRISSITSTAKW 174
>DUS_AZOBR (P45672) Probable tRNA-dihydrouridine synthase (EC 1.-.-.-)| Length = 328 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -1 Query: 363 PTRRRLAIHVYGCNSDI-AEAAKLQEQSWTAIDDV 262 P + +A+ + GC D+ AEAAKL E AI D+ Sbjct: 64 PEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDI 98
>ADR1_MOUSE (Q91VH1) Adiponectin receptor protein 1| Length = 375 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 215 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 75 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263
>ADR1_HUMAN (Q96A54) Adiponectin receptor protein 1 (Progestin and adipoQ| receptor family member I) Length = 375 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 215 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 75 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 249 PSRIQHHQLQSMTALAAWQPQQYQSCNH 332 PS +QHHQ Q+ AL PQQ + H Sbjct: 1141 PSPVQHHQHQAAQALHLASPQQQSAIYH 1168
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 249 PSRIQHHQLQSMTALAAWQPQQYQSCNH 332 PS +QHHQ Q+ AL PQQ + H Sbjct: 1167 PSPVQHHQHQAAQALHLASPQQQSAIYH 1194
>SERC_MYCTU (P63514) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 186 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 299 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>SERC_MYCBO (P63515) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 186 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 299 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>TYSY_BIFLO (Q8G3T9) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 266 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +3 Query: 192 PNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAAWQPQQYQ--SCNHTHGLPIVYVLE 365 P +DP +R +D+I I+HH ++AW P + + + H L YV + Sbjct: 103 PTPEDP---NRTIDQISNVLDLIKHHPDSRRMIVSAWNPAEVEKMALPPCHALFQFYVAD 159 Query: 366 KMILCR 383 + C+ Sbjct: 160 DKLSCQ 165
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -2 Query: 350 DWQSMCMVATLILLRLPSCKSSHGLQLMMLNP*RFRPNF 234 +++ +C + + L +P C+ GLQ+ + NP RPNF Sbjct: 2322 EYECVCDLVSCDLPPVPPCED--GLQMTLTNPGECRPNF 2358
>GUN_SALTI (Q8Z289) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (Carboxymethylcellulase) (CMCase) Length = 369 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 226 PLLREVGSCLFGTMPT*DHFPSSDGYLSFVWLQFG 122 P L+ G+ DHFP SD Y ++V FG Sbjct: 307 PFLQNRGAQAVQRQRVADHFPGSDAYYNYVLTLFG 341
>YEEF_ECOLI (P0AA47) Inner membrane transport protein yeeF| Length = 452 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/43 (23%), Positives = 24/43 (55%) Frame = -2 Query: 197 VWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENHVV 69 +++ A + S P W+F++ + A T+ + +K ++ N V+ Sbjct: 119 IYFEALVPSIPS--WMFVVALVAFMTAFNLRSLKSVANFNTVI 159
>YEEF_ECO57 (P0AA48) Inner membrane transport protein yeeF| Length = 452 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/43 (23%), Positives = 24/43 (55%) Frame = -2 Query: 197 VWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENHVV 69 +++ A + S P W+F++ + A T+ + +K ++ N V+ Sbjct: 119 IYFEALVPSIPS--WMFVVALVAFMTAFNLRSLKSVANFNTVI 159
>SYV_UREPA (Q9PQM4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = +3 Query: 6 DDCFMYQLWYRDALAAWWRQPHNMIFC 86 D C QLW+ + W+ + N I+C Sbjct: 404 DWCISRQLWWGHQIPVWYHKKTNQIYC 430
>LIM_HALRO (Q25132) LIM/homeobox protein LIM (HRLIM)| Length = 514 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +3 Query: 72 NMIFCR*LFYINYGKRCPNCSH 137 N++FC+ F+ +G +C C H Sbjct: 325 NLVFCKDDFFKRFGTKCTACGH 346 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,679,408 Number of Sequences: 219361 Number of extensions: 1278217 Number of successful extensions: 3315 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3314 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
