ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_SCHPO (Q9P7E3) S-adenosylmethionine decarboxylase proenzyme... 30 1.5
2MOP_DESGI (Q46509) Aldehyde oxidoreductase (EC 1.2.99.7) (Molybd... 29 2.6
3DODA_PORGR (Q7XA48) 4,5-DOPA dioxygenase extradiol (EC 1.13.-.-) 29 2.6
4CRTX_ENTAG (Q01330) Zeaxanthin glucosyl transferase (EC 2.4.1.-) 27 9.9

>DCAM_SCHPO (Q9P7E3) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 378

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 110 SSLMHERTTSLIHLKGQEHWCYNSFSTRLLQ---G*HIRQVVEKEAAKHRVEK--ITAFD 274
           S+++++   + IH+  QEH  Y SF T + Q   G  I + +EK        K  +T F 
Sbjct: 276 SNMIYKDRYATIHVTPQEHCSYASFETNVSQFQFGRSISETIEKTVKTFGANKFCLTLFQ 335

Query: 275 GALASNE 295
              AS E
Sbjct: 336 AKGASQE 342



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>MOP_DESGI (Q46509) Aldehyde oxidoreductase (EC 1.2.99.7) (Molybdenum iron|
           sulfur protein)
          Length = 907

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 61  HNIISEFTGALSFHGCQFLDA*TYNIPNPSQGARTLVLQQLFDKTITG 204
           H   SEF   L+  G QF+ A  YNIPN     RT+    ++     G
Sbjct: 488 HGPYSEFGDLLTLRGAQFIGA-GYNIPNIRGLGRTVATNHVWGSAFRG 534



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>DODA_PORGR (Q7XA48) 4,5-DOPA dioxygenase extradiol (EC 1.13.-.-)|
          Length = 271

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -3

Query: 257 FQHGVWLPLSRRLDECVTPVIVLS-----KSCCNTNV---LAP*DGLGMLYVHASRN*HP 102
           F H  W+PLS    E   PV  LS      +  + NV   LAP  G G+L++ +    HP
Sbjct: 119 FDHSSWVPLSMMCPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHP 178

Query: 101 *KD 93
             D
Sbjct: 179 SDD 181



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>CRTX_ENTAG (Q01330) Zeaxanthin glucosyl transferase (EC 2.4.1.-)|
          Length = 413

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 239 LPLSRRLDECVTPVIVLSKS 180
           LP  RRLDEC++P+  +S+S
Sbjct: 185 LPERRRLDECLSPLAQISQS 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,644,465
Number of Sequences: 219361
Number of extensions: 878810
Number of successful extensions: 2066
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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