Clone Name | rbastl54f02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470529.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2514 Score = 85.7 bits (43), Expect = 8e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| ||| Sbjct: 2489 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2430 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||||||||| |||||||||| Sbjct: 2429 tggcttcccacgagagcttgagtgtcatatt 2399
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 8e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| ||| Sbjct: 4138887 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138828 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||||||||| |||||||||| Sbjct: 4138827 tggcttcccacgagagcttgagtgtcatatt 4138797 Score = 54.0 bits (27), Expect = 3e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||| ||||| ||||||||| |||||||| ||||| | || Sbjct: 4145772 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145714 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||| ||||| || ||||||| Sbjct: 4145713 tggcttcccacgagcgcttgagtatcatatt 4145683
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 8e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| ||| Sbjct: 4138996 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138937 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||||||||| |||||||||| Sbjct: 4138936 tggcttcccacgagagcttgagtgtcatatt 4138906 Score = 54.0 bits (27), Expect = 3e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||| ||||| ||||||||| |||||||| ||||| | || Sbjct: 4145881 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145823 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||| ||||| || ||||||| Sbjct: 4145822 tggcttcccacgagcgcttgagtatcatatt 4145792
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 85.7 bits (43), Expect = 8e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| ||| Sbjct: 39524 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 39465 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||||||||| |||||||||| Sbjct: 39464 tggcttcccacgagagcttgagtgtcatatt 39434 Score = 54.0 bits (27), Expect = 3e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||| ||||| ||||||||| |||||||| ||||| | || Sbjct: 46409 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 46351 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||| ||||| || ||||||| Sbjct: 46350 tggcttcccacgagcgcttgagtatcatatt 46320
>dbj|AK069518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024A16, full insert sequence Length = 2951 Score = 85.7 bits (43), Expect = 8e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| ||| Sbjct: 2749 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2690 Query: 282 tggcttccaacgagagcttgtgtgtcatatt 312 |||||||| ||||||||||| |||||||||| Sbjct: 2689 tggcttcccacgagagcttgagtgtcatatt 2659
>gb|AY109909.1| Zea mays CL23422_1 mRNA sequence Length = 920 Score = 61.9 bits (31), Expect = 1e-06 Identities = 73/89 (82%) Strand = Plus / Plus Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281 ||||| |||||||||||||||||||||| |||| |||| |||| |||||| || Sbjct: 274 tcgtcaagaaagaggcagccaaacaccgagttgnnnnnntcacggcctctgatggtatcc 333 Query: 282 tggcttccaacgagagcttgtgtgtcata 310 |||||||| || |||||||| |||||||| Sbjct: 334 tggcttcctaccagagcttgcgtgtcata 362
>gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complete sequence Length = 137176 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 gcaacacaagcaaattccatc 48 ||||||||||||||||||||| Sbjct: 66150 gcaacacaagcaaattccatc 66170
>gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, complete sequence Length = 217832 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tctcaaggggcaagaacattg 168 ||||||||||||||||||||| Sbjct: 150672 tctcaaggggcaagaacattg 150652
>ref|XM_757192.1| Ustilago maydis 521 hypothetical protein (UM06138.1) partial mRNA Length = 1917 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gaggcagccaaacaccgtgt 252 |||||||||||||||||||| Sbjct: 1764 gaggcagccaaacaccgtgt 1745
>gb|AC007360.3| Homo sapiens BAC clone RP11-104K7 from 7, complete sequence Length = 80858 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gcaaattccatcttaagctt 56 |||||||||||||||||||| Sbjct: 26590 gcaaattccatcttaagctt 26609
>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence Length = 192682 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aagcttcactcacaatatca 70 |||||||||||||||||||| Sbjct: 93186 aagcttcactcacaatatca 93167
>gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, complete sequence Length = 206211 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gagaaagaggcagccaaaca 246 |||||||||||||||||||| Sbjct: 53357 gagaaagaggcagccaaaca 53338
>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence Length = 194546 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gcaaattccatcttaagctt 56 |||||||||||||||||||| Sbjct: 192634 gcaaattccatcttaagctt 192615
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 caacatccctaatccatctc 151 |||||||||||||||||||| Sbjct: 190841 caacatccctaatccatctc 190822
>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25, complete sequence Length = 146063 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aatatttattaagcaacaca 35 |||||||||||||||||||| Sbjct: 127937 aatatttattaagcaacaca 127918
>tpg|BK000392.1| TPA: TPA_exp: Homo sapiens equilibrative nucleoside transporter 3 (ENT3) gene, complete cds Length = 45759 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cagcaatatttattaagcaa 31 |||||||||||||||||||| Sbjct: 12084 cagcaatatttattaagcaa 12103
>gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, complete sequence Length = 177266 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tatttattaagcaacacaag 37 |||||||||||||||||||| Sbjct: 69176 tatttattaagcaacacaag 69157
>gb|AF463747.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence Length = 6926 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gagaaagaggcagccaaaca 246 |||||||||||||||||||| Sbjct: 2153 gagaaagaggcagccaaaca 2134
>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence Length = 150945 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaaaatcactgcctttgatg 275 |||||||||||||||||||| Sbjct: 92556 aaaaatcactgcctttgatg 92575
>emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chromosome 10 Contains the 5' end of a novel gene, the gene for transmembrane receptor Unc5H2 (UNC5H2), the 5' end of the gene for equilibrative nucleoside transporter 3 (ENT3) and a CpG island, complete sequence Length = 122288 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cagcaatatttattaagcaa 31 |||||||||||||||||||| Sbjct: 114751 cagcaatatttattaagcaa 114770 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,779,326 Number of Sequences: 3902068 Number of extensions: 2779326 Number of successful extensions: 54165 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54115 Number of HSP's gapped (non-prelim): 50 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)