ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470529.1| Oryza sativa (japonica cultivar-group), predic... 86 8e-14
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 8e-14
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 8e-14
4gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 86 8e-14
5dbj|AK069518.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 8e-14
6gb|AY109909.1| Zea mays CL23422_1 mRNA sequence 62 1e-06
7gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complet... 42 1.1
8gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, comple... 42 1.1
9ref|XM_757192.1| Ustilago maydis 521 hypothetical protein (UM061... 40 4.2
10gb|AC007360.3| Homo sapiens BAC clone RP11-104K7 from 7, complet... 40 4.2
11gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, co... 40 4.2
12gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, co... 40 4.2
13gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, com... 40 4.2
14gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 40 4.2
15emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 ... 40 4.2
16tpg|BK000392.1| TPA: TPA_exp: Homo sapiens equilibrative nucleos... 40 4.2
17gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, co... 40 4.2
18gb|AF463747.1| Mus musculus strain C57BL/6J cytokine gene cluste... 40 4.2
19gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, c... 40 4.2
20emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chro... 40 4.2

>ref|XM_470529.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2514

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                        
Query: 222  tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
            ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 2489 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2430

                                           
Query: 282  tggcttccaacgagagcttgtgtgtcatatt 312
            |||||||| ||||||||||| ||||||||||
Sbjct: 2429 tggcttcccacgagagcttgagtgtcatatt 2399



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                           
Query: 222     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
               ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 4138887 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138828

                                              
Query: 282     tggcttccaacgagagcttgtgtgtcatatt 312
               |||||||| ||||||||||| ||||||||||
Sbjct: 4138827 tggcttcccacgagagcttgagtgtcatatt 4138797



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                           
Query: 222     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
               ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 4145772 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145714

                                              
Query: 282     tggcttccaacgagagcttgtgtgtcatatt 312
               |||||||| ||||| ||||| || |||||||
Sbjct: 4145713 tggcttcccacgagcgcttgagtatcatatt 4145683



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                           
Query: 222     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
               ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 4138996 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138937

                                              
Query: 282     tggcttccaacgagagcttgtgtgtcatatt 312
               |||||||| ||||||||||| ||||||||||
Sbjct: 4138936 tggcttcccacgagagcttgagtgtcatatt 4138906



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                           
Query: 222     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
               ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 4145881 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145823

                                              
Query: 282     tggcttccaacgagagcttgtgtgtcatatt 312
               |||||||| ||||| ||||| || |||||||
Sbjct: 4145822 tggcttcccacgagcgcttgagtatcatatt 4145792



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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                         
Query: 222   tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
             ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 39524 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 39465

                                            
Query: 282   tggcttccaacgagagcttgtgtgtcatatt 312
             |||||||| ||||||||||| ||||||||||
Sbjct: 39464 tggcttcccacgagagcttgagtgtcatatt 39434



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                         
Query: 222   tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
             ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 46409 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 46351

                                            
Query: 282   tggcttccaacgagagcttgtgtgtcatatt 312
             |||||||| ||||| ||||| || |||||||
Sbjct: 46350 tggcttcccacgagcgcttgagtatcatatt 46320



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>dbj|AK069518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024A16, full
            insert sequence
          Length = 2951

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                        
Query: 222  tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
            ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 2749 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2690

                                           
Query: 282  tggcttccaacgagagcttgtgtgtcatatt 312
            |||||||| ||||||||||| ||||||||||
Sbjct: 2689 tggcttcccacgagagcttgagtgtcatatt 2659



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>gb|AY109909.1| Zea mays CL23422_1 mRNA sequence
          Length = 920

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                       
Query: 222 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 281
           ||||| |||||||||||||||||||||| ||||      |||| |||| ||||||   ||
Sbjct: 274 tcgtcaagaaagaggcagccaaacaccgagttgnnnnnntcacggcctctgatggtatcc 333

                                        
Query: 282 tggcttccaacgagagcttgtgtgtcata 310
           |||||||| || |||||||| ||||||||
Sbjct: 334 tggcttcctaccagagcttgcgtgtcata 362



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>gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complete sequence
          Length = 137176

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    gcaacacaagcaaattccatc 48
             |||||||||||||||||||||
Sbjct: 66150 gcaacacaagcaaattccatc 66170



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>gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, complete sequence
          Length = 217832

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    tctcaaggggcaagaacattg 168
              |||||||||||||||||||||
Sbjct: 150672 tctcaaggggcaagaacattg 150652



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>ref|XM_757192.1| Ustilago maydis 521 hypothetical protein (UM06138.1) partial mRNA
          Length = 1917

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gaggcagccaaacaccgtgt 252
            ||||||||||||||||||||
Sbjct: 1764 gaggcagccaaacaccgtgt 1745



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>gb|AC007360.3| Homo sapiens BAC clone RP11-104K7 from 7, complete sequence
          Length = 80858

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    gcaaattccatcttaagctt 56
             ||||||||||||||||||||
Sbjct: 26590 gcaaattccatcttaagctt 26609



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>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aagcttcactcacaatatca 70
             ||||||||||||||||||||
Sbjct: 93186 aagcttcactcacaatatca 93167



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>gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, complete sequence
          Length = 206211

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   gagaaagaggcagccaaaca 246
             ||||||||||||||||||||
Sbjct: 53357 gagaaagaggcagccaaaca 53338



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>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence
          Length = 194546

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gcaaattccatcttaagctt 56
              ||||||||||||||||||||
Sbjct: 192634 gcaaattccatcttaagctt 192615



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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    caacatccctaatccatctc 151
              ||||||||||||||||||||
Sbjct: 190841 caacatccctaatccatctc 190822



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>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25,
              complete sequence
          Length = 146063

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     aatatttattaagcaacaca 35
              ||||||||||||||||||||
Sbjct: 127937 aatatttattaagcaacaca 127918



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>tpg|BK000392.1| TPA: TPA_exp: Homo sapiens equilibrative nucleoside transporter 3
             (ENT3) gene, complete cds
          Length = 45759

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cagcaatatttattaagcaa 31
             ||||||||||||||||||||
Sbjct: 12084 cagcaatatttattaagcaa 12103



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>gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, complete sequence
          Length = 177266

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    tatttattaagcaacacaag 37
             ||||||||||||||||||||
Sbjct: 69176 tatttattaagcaacacaag 69157



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>gb|AF463747.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence
          Length = 6926

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gagaaagaggcagccaaaca 246
            ||||||||||||||||||||
Sbjct: 2153 gagaaagaggcagccaaaca 2134



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>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   aaaaatcactgcctttgatg 275
             ||||||||||||||||||||
Sbjct: 92556 aaaaatcactgcctttgatg 92575



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>emb|AL359384.17| Human DNA sequence from clone RP11-58O1 on chromosome 10 Contains the 5'
              end of a novel gene, the gene for transmembrane receptor
              Unc5H2 (UNC5H2), the 5' end of the gene for equilibrative
              nucleoside transporter 3 (ENT3) and a CpG island, complete
              sequence
          Length = 122288

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     cagcaatatttattaagcaa 31
              ||||||||||||||||||||
Sbjct: 114751 cagcaatatttattaagcaa 114770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,779,326
Number of Sequences: 3902068
Number of extensions: 2779326
Number of successful extensions: 54165
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54115
Number of HSP's gapped (non-prelim): 50
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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