ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54e06 |
|---|---|
| Clone Library Name | barley_pub |
>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/40 (45%), Positives = 29/40 (72%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 250 SD TDPFNRS LT D + P+T+LK +I+ ++ ++ +K + Sbjct: 1025 SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064
>UBE4A_PONPY (Q5R9G3) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/40 (45%), Positives = 29/40 (72%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 250 SD TDPFNRS LT D + P+T+LK +I+ ++ ++ +K + Sbjct: 1025 SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064
>UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/40 (45%), Positives = 29/40 (72%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 250 SD TDPFNRS LT D + P+T+LK +I+ ++ ++ +K + Sbjct: 1025 SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQ 1064
>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 1010 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRR 250 SD TDPFNR+ LT D + P+ L+ I F++S++++ R Sbjct: 968 SDATDPFNRTPLTLDDVTPNDTLREEINTFLKSKRNKHSR 1007
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/33 (51%), Positives = 24/33 (72%) Frame = -1 Query: 360 TDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQS 262 TDPFNR LT+ ML P +LK +I+ ++R +QS Sbjct: 1138 TDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 1170
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -1 Query: 360 TDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQS 262 TDPFNR LT+ ML P +LK +I+ ++R +Q+ Sbjct: 1267 TDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 1299
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 35.0 bits (79), Expect = 0.045 Identities = 14/39 (35%), Positives = 28/39 (71%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKR 253 S +PFNR+ L+ + L PD++LK +I+E++ +++ K+ Sbjct: 942 STPNNPFNRAPLSHNELSPDSELKAKIQEWICQKRNSKK 980
>LOLD2_RHOBA (Q7UPK3) Lipoprotein-releasing system ATP-binding protein lolD 2| Length = 255 Score = 31.6 bits (70), Expect = 0.49 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +1 Query: 193 SSLHHISSTIRLP--------GLRVDSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAV 348 S+L H+ +T+ P G R+D+ R D++ N+Q+ I ++ H+L EL A+ Sbjct: 52 STLMHLLATLDQPDSGEVWFDGTRIDNQSRARR---DQYRNSQIGIIFQFYHLLPELSAI 108 Query: 349 EWISA 363 E + A Sbjct: 109 ENVLA 113
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 30.8 bits (68), Expect = 0.84 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 357 DPFNRSQLTQDMLIPDTDLKLRIEEFV 277 DP RS LTQD LIP+ +K I+ F+ Sbjct: 279 DPVTRSPLTQDQLIPNLAMKEVIDAFI 305
>ECO1_YEAST (P43605) N-acetyltransferase ECO1 (EC 2.3.1.-) (Establishment of| cohesion protein 1) (Chromosome transmission fidelity protein 7) Length = 281 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 11 NNNSQLNKKMKCSY-KWT*HNLMIDDKAMHDKMYTLRFAG 127 NN S+ NK +KC + + + I+D+A+H+K +TL+ G Sbjct: 24 NNGSKSNKIVKCDKCEMSYSSTSIEDRAIHEKYHTLQLHG 63
>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 961 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 369 SDGTDPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKR 253 SD TDPFNR L + + P+ +L+ +I F + ++ + Sbjct: 918 SDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAK 956
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 357 DPFNRSQLTQDMLIPDTDLKLRIEEFV 277 DP RS LTQ+ LIP+ +K I+ F+ Sbjct: 269 DPVTRSPLTQEQLIPNLAMKEVIDAFI 295
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 357 DPFNRSQLTQDMLIPDTDLKLRIEEFV 277 DP RS LTQ+ LIP+ +K I+ F+ Sbjct: 268 DPVTRSPLTQEQLIPNLAMKEVIDAFI 294
>OPSD_PETMA (Q98980) Rhodopsin| Length = 353 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L+ WS L GM S GPD +++N Sbjct: 172 LVGWSRYLPEGMQCSCGPDYYTLN 195
>IPMK_RAT (Q99NI4) Inositol polyphosphate multikinase (EC 2.7.1.151)| (Inositol 1,3,4,6-tetrakisphosphate 5-kinase) Length = 396 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 220 IRLPGLRVDSPPLPRLLG 273 +R PG DSPP+PRLLG Sbjct: 10 LRPPGSTGDSPPVPRLLG 27
>IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1.151)| (Inositol 1,3,4,6-tetrakisphosphate 5-kinase) Length = 396 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 220 IRLPGLRVDSPPLPRLLG 273 +R PG DSPP+PRLLG Sbjct: 10 LRPPGSTGDSPPVPRLLG 27
>DSVA_DESVH (P45574) Sulfite reductase, dissimilatory-type alpha subunit (EC| 1.8.99.3) (Desulfoviridin alpha subunit) (Hydrogensulfite reductase alpha subunit) Length = 436 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +2 Query: 197 HSTISAAPSGSPVSESTALRFLDCWDLTNSSMRNLRSVSG 316 H+ A PSG S + D WDL S + N+ +G Sbjct: 97 HTVRVAQPSGKYYSADYLRQLCDIWDLRGSGLTNMHGSTG 136
>OPSG4_BRARE (Q9W6A6) Green-sensitive opsin-4 (Green cone photoreceptor pigment| 4) (Opsin-1, medium-wave-sensitive 4) (Opsin RH2-4) Length = 349 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L+ WS + GM S GPD +++N Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195
>OPSG3_BRARE (Q8AYM7) Green-sensitive opsin-3 (Green cone photoreceptor pigment| 3) (Opsin-1, medium-wave-sensitive 3) (Opsin RH2-3) Length = 349 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L+ WS + GM S GPD +++N Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195
>OPSD_LAMJA (P22671) Rhodopsin| Length = 353 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L+ WS + GM S GPD +++N Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195
>YDZB_SCHPO (O13718) Hypothetical protein C14C4.11 in chromosome I| Length = 734 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +2 Query: 194 VHSTISAA--PSGSPVSESTALRFLDCWDLTNSSMRNLRSVSGINMS 328 V S +SA+ P G P+S+ A++ L+ D +++ L + +N++ Sbjct: 75 VKSKVSASQEPDGPPISKEEAIKLLERLDSCTETVKKLEKYTRLNLT 121
>OPSG_ORYLA (P87366) Green-sensitive opsin (Green cone photoreceptor pigment)| (KFH-G) Length = 345 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 99 L+ WS + G+ +S GPD +++ N + + +C FC Sbjct: 173 LVGWSRYIPEGIQVSCGPDYYTLAPGFNNESFVMYMFSCHFC 214
>CAC2D_RAT (P54290) Dihydropyridine-sensitive L-type, calcium channel| alpha-2/delta subunits precursor [Contains: L-type calcium channel alpha-2 subunit; L-type calcium channel delta subunit] Length = 1091 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 303 LKLRIEEFVRSQQSRKRRAVDSETGEPD 220 +K +IEE + +S+K + DSET +PD Sbjct: 612 IKAKIEETITQARSKKGKMKDSETLKPD 639
>CAC2D_HUMAN (P54289) Dihydropyridine-sensitive L-type, calcium channel| alpha-2/delta subunits precursor [Contains: L-type calcium channel alpha-2 subunit; L-type calcium channel delta subunit] Length = 1091 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = -1 Query: 354 PFNRSQLTQDMLIPDTD---LKLRIEEFVRSQQSRKRRAVDSETGEPD 220 P N + + +++P +K ++EE + +S+K + DSET +PD Sbjct: 592 PVNGTDYSLALVLPTYSFYYIKAKLEETITQARSKKGKMKDSETLKPD 639
>ZPR1_SCHPO (O13724) Zinc-finger protein zpr1| Length = 459 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -1 Query: 357 DPFNRSQLTQDMLIPDTDLKLRIEEFVRSQQSRKRRAVD---SETGEPDG 217 DP ++S L Q+ PD D + IEE+ RS Q + ++ +E E DG Sbjct: 408 DPLSQSYL-QNYYAPDPDPNMTIEEYERSFQVNEELGLNDMKTENYEKDG 456
>OPSG2_BRARE (Q8AYM8) Green-sensitive opsin-2 (Green cone photoreceptor pigment| 2) (Opsin-1, medium-wave-sensitive 2) (Opsin RH2-2) Length = 349 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 99 L WS + GM S GPD +++ N L + +C FC Sbjct: 172 LFGWSRYIPEGMQTSCGPDYYTLNPEFNNESYVLYMFSCHFC 213
>OPSG1_BRARE (Q9W6A5) Green-sensitive opsin-1 (Green cone photoreceptor pigment| 1) (Opsin-1, medium-wave-sensitive 1) (Opsin RH2-1) Length = 349 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L WS L GM S GPD +++N Sbjct: 172 LFGWSRYLPEGMQTSCGPDYYTLN 195
>DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-related formin-3)| (DRF3) (mDIA2) (p134mDIA2) Length = 1171 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +1 Query: 139 PFTEN*SGPKL-MSIPAFSSSLHHISSTIRLPGLRVDSPPLPRL 267 P+ PKL ++I + + ++IR+PG + + PPLP L Sbjct: 29 PYEPGEKRPKLHLNIRTLTDDMLDKFASIRIPGSKKERPPLPHL 72
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +2 Query: 218 PSGSPVSESTALRFLDCWDL 277 PSG +SES+AL F D W L Sbjct: 394 PSGGGMSESSALIFADSWKL 413
>SPORA_IPOBA (P10917) Sporamin A precursor| Length = 219 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 194 LLKAGMDISFGPDQFSVNGVDCSLQI*ACTFC 99 LLKAG +S +QF + VD +L T+C Sbjct: 149 LLKAGEFVSDNSNQFKIEVVDANLNFYKLTYC 180
>NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)| (NHE-4) Length = 529 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/27 (33%), Positives = 18/27 (66%) Frame = -2 Query: 215 LLIWWSELLKAGMDISFGPDQFSVNGV 135 ++IWW+ L++ + I+ QF+ +GV Sbjct: 383 VIIWWAGLMRGAVSIALAFKQFTYSGV 409
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 275 LTNSSMRNLRSVSGINMS*VSWERLNGSVPS 367 LT S R L S + + + +SW RL G++PS Sbjct: 427 LTGSMPRWLSSSNELQLLDLSWNRLTGAIPS 457
>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)| (Blue cone photoreceptor pigment) (Opsin SWS-2) Length = 354 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVNGV--DCSLQI*ACTFCHALPY 84 L+ WS + G+ S GPD ++ N + S + FC A+P+ Sbjct: 179 LLGWSRYIPEGLQCSCGPDWYTTNNKFNNESYVMFLFCFCFAVPF 223
>OPSB_ANOCA (P51471) Blue-sensitive opsin (Blue photoreceptor pigment) (RH2| opsin) Length = 355 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 212 LIWWSELLKAGMDISFGPDQFSVN 141 L+ WS + GM S GPD +++N Sbjct: 172 LLGWSRYIPEGMQCSCGPDYYTLN 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,069,671 Number of Sequences: 219361 Number of extensions: 962519 Number of successful extensions: 2321 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2321 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
