ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468783.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 6e-15
3gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genom... 90 6e-15
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
5gb|AY109424.1| Zea mays CL2020_2 mRNA sequence 80 6e-12
6gb|AC074375.7| Homo sapiens BAC clone RP11-729M8 from 2, complet... 44 0.31
7gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromoso... 42 1.2
8ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase A... 40 4.9
9gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, compl... 40 4.9
10emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22... 40 4.9
11gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map... 40 4.9
12gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 ma... 40 4.9
13gb|AC095035.2| Homo sapiens chromosome 1 clone RP11-159J16, comp... 40 4.9
14tpg|BK001470.1| TPA: TPA_exp: Arabidopsis thaliana callose synth... 40 4.9
15dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.9
16emb|BX679657.5| Mouse DNA sequence from clone RP23-267P2 on chro... 40 4.9
17emb|AL845308.11| Mouse DNA sequence from clone RP23-31I2 on chro... 40 4.9
18emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on ch... 40 4.9 
>ref|XM_468783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3371

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                        
Query: 272  gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 331
            ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 3035 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 2976

                                         
Query: 332  gtgagctgggagcggttgaatggatcagt 360
            || || || || |||||||| ||||||||
Sbjct: 2975 gtaaggtgagaacggttgaacggatcagt 2947
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 272      gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 331
                ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 17703903 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 17703844

                                             
Query: 332      gtgagctgggagcggttgaatggatcagt 360
                || || || || |||||||| ||||||||
Sbjct: 17703843 gtaaggtgagaacggttgaacggatcagt 17703815
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>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete
             sequence
          Length = 136916

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                         
Query: 272   gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 331
             ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 80104 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 80163

                                          
Query: 332   gtgagctgggagcggttgaatggatcagt 360
             || || || || |||||||| ||||||||
Sbjct: 80164 gtaaggtgagaacggttgaacggatcagt 80192
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 272      gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 331
                ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 17697444 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 17697385

                                             
Query: 332      gtgagctgggagcggttgaatggatcagt 360
                || || || || |||||||| ||||||||
Sbjct: 17697384 gtaaggtgagaacggttgaacggatcagt 17697356
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>gb|AY109424.1| Zea mays CL2020_2 mRNA sequence
          Length = 1022

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                       
Query: 254 cgcttcctcgactgctgggacctgacaaattcttcaatgcgcaacttgagatctgtatcc 313
           ||||| ||| |||||||||||| |||||| || || ||  |||||||||| || || |  
Sbjct: 732 cgctttctcaactgctgggaccggacaaactcctcgatctgcaacttgagctccgtgttt 673

                                                       
Query: 314 ggtatcaacatgtcttgagtgagctgggagcggttgaatggatc 357
           ||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 672 ggtatcagcatgtcttgagtgaggtgggagcggttaaatggatc 629
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>gb|AC074375.7| Homo sapiens BAC clone RP11-729M8 from 2, complete sequence
          Length = 106896

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 170   taatgtccatcccagcttttag 191
             ||||||||||||||||||||||
Sbjct: 58244 taatgtccatcccagcttttag 58223
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>gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromosome ul, complete sequence
          Length = 215430

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    tcagcagcaccatcaggctcc 229
              |||||||||||||||||||||
Sbjct: 128994 tcagcagcaccatcaggctcc 128974
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>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
            complete cds
          Length = 5772

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  catatcagcagcaccatcag 224
            ||||||||||||||||||||
Sbjct: 4928 catatcagcagcaccatcag 4909
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>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
          Length = 5950

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  catatcagcagcaccatcag 224
            ||||||||||||||||||||
Sbjct: 5081 catatcagcagcaccatcag 5062
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>emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41
             Contains part of the gene for melanoma antigen recognized
             by T cells 2 protein (MART2), complete sequence
          Length = 137678

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    caatgcatgacaaaatgtac 109
             ||||||||||||||||||||
Sbjct: 76072 caatgcatgacaaaatgtac 76053
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>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
             sequence
          Length = 102585

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   catatcagcagcaccatcag 224
             ||||||||||||||||||||
Sbjct: 95717 catatcagcagcaccatcag 95698
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>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
             sequence
          Length = 104009

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   catatcagcagcaccatcag 224
             ||||||||||||||||||||
Sbjct: 13515 catatcagcagcaccatcag 13496
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>gb|AC095035.2| Homo sapiens chromosome 1 clone RP11-159J16, complete sequence
          Length = 173084

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   accatttaccgagaattgat 157
             ||||||||||||||||||||
Sbjct: 51729 accatttaccgagaattgat 51710
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>tpg|BK001470.1| TPA: TPA_exp: Arabidopsis thaliana callose synthase (LAP1) mRNA,
            complete cds
          Length = 5772

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  catatcagcagcaccatcag 224
            ||||||||||||||||||||
Sbjct: 4928 catatcagcagcaccatcag 4909
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     tctccgagtcgacagccctc 253
               ||||||||||||||||||||
Sbjct: 4703863 tctccgagtcgacagccctc 4703882
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>emb|BX679657.5| Mouse DNA sequence from clone RP23-267P2 on chromosome 2, complete
            sequence
          Length = 42307

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   tgaacaaaaagatgaaatgt 46
            ||||||||||||||||||||
Sbjct: 9076 tgaacaaaaagatgaaatgt 9057
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>emb|AL845308.11| Mouse DNA sequence from clone RP23-31I2 on chromosome 2, complete
              sequence
          Length = 209309

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tgaacaaaaagatgaaatgt 46
              ||||||||||||||||||||
Sbjct: 138752 tgaacaaaaagatgaaatgt 138771



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgaacaaaaagatgaaatgt 46
             ||||||||||||||||||||
Sbjct: 62816 tgaacaaaaagatgaaatgt 62797
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>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete
             sequence
          Length = 136809

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   cagcagcaccatcaggctcc 229
             ||||||||||||||||||||
Sbjct: 21295 cagcagcaccatcaggctcc 21276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,000,779
Number of Sequences: 3902068
Number of extensions: 3000779
Number of successful extensions: 54858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54787
Number of HSP's gapped (non-prelim): 71
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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