ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54e04 |
|---|---|
| Clone Library Name | barley_pub |
>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) (RecQ4) (RTS) Length = 1208 Score = 30.8 bits (68), Expect = 0.88 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = +3 Query: 189 HWQTSLPASSGELAPTW*ICQPCHSPADAPLGVPRGC 299 H Q SL G L P W Q CHS LG P+ C Sbjct: 174 HLQASLSQRLGSLDPGW--LQRCHSEVPDFLGAPKAC 208
>TNNI_PONLE (P05547) Troponin I (TnI)| Length = 201 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -3 Query: 285 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 193 + E+++QV+D GKF + L +++K KFA Sbjct: 126 INELNIQVNDLRGKFIKPTLKKVSKYENKFA 156
>TNNI_DROME (P36188) Troponin I (Tn I) (Protein wings apart-A) (Protein heldup)| Length = 268 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -3 Query: 285 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 193 + +++ QV+D GKF + AL +++K KFA Sbjct: 184 INDLNAQVNDLRGKFVKPALKKVSKYENKFA 214
>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 994 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2 Query: 38 YKQNEIVG*TSNKYSSMNTTLI*SDWYKFTYF-SFESHFNPS*YSSTTTL 184 Y+Q E +Y++ N TL+ +WY F YF S E++ N S + TL Sbjct: 27 YQQGEADYHFETRYNTRNATLLNGEWY-FQYFESLEAYLNHSNKQESKTL 75
>CT078_HUMAN (Q9BR46) Hypothetical protein C20orf78| Length = 151 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 138 LNLILTRRSTHQLLPWAHWQ 197 L+L+LTR+ Q L W+HWQ Sbjct: 71 LDLLLTRKKRSQGLHWSHWQ 90
>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein| Snu246) Length = 2163 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 110 DWYKFTYFSFESHFNPS*YS-STTTLGALANFLACFVRRASADLV 241 DW+ ++YF H NPS Y T+ ++ FL+ V DLV Sbjct: 1771 DWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLV 1815
>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2| (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5) Length = 830 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +3 Query: 249 QPCHSPADAPLGVPRGCPCRRHLPAP 326 +P HSPA AP P P PAP Sbjct: 17 RPLHSPAPAPTSTPAPSPASASTPAP 42
>GLMU_RALSO (Q8Y304) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 455 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -3 Query: 333 SFKVLEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTK-QARKFANAPRVVVDEYYD 157 + L G G D+L G+ VHL G+ R A R+T+ +K AN ++ + E Sbjct: 108 TLNALVGAAGQDHL-GVLTVHLDDPTGYGRIVRDATGRITRIVEQKDANETQLAIHEVNT 166 Query: 156 GL 151 G+ Sbjct: 167 GI 168
>SLIK2_MOUSE (Q810C0) SLIT and NTRK-like protein 2 precursor| Length = 846 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 232 RPGEFASLVTHLQMHLLESHEVVHAEDTFQHLET 333 RPG F+ L T ++HL + V EDTF LE+ Sbjct: 102 RPGAFSGLKTLKRLHLNNNKLEVLREDTFLGLES 135
>APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) Length = 380 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326
>APJ_HUMAN (P35414) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (HG11) Length = 380 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326
>APJ_MOUSE (Q9WV08) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (MSR) Length = 377 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 292 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 324
>WDR43_HUMAN (Q15061) WD-repeat protein 43| Length = 720 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 254 LSLTCRCTSWSPTRLSMPKTP 316 LS TC C +W+P RL ++P Sbjct: 101 LSGTCTCLAWAPARLQAKESP 121
>PLK3_MOUSE (Q60806) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) Length = 631 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 107 TKLVLCSWRSIYLMFNQQFRSACTSL 30 TKL+L W + + F + RSACT L Sbjct: 576 TKLILSGWEPLLVTFVARNRSACTYL 601
>PLK3_RAT (Q9R011) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) (Fragment) Length = 615 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 107 TKLVLCSWRSIYLMFNQQFRSACTSL 30 TKL+L W + + F + RSACT L Sbjct: 561 TKLILSGWEPLLVTFVARNRSACTYL 586
>APJ_RAT (Q9JHG3) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (B78) (GPCR34) Length = 377 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 292 CTCISYVNSCLNPFLYAFFDPRFRRACTSML----CC 324
>YFCM_ECOLI (P76938) Hypothetical protein yfcM| Length = 182 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -3 Query: 321 LEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTKQARKFANAPRVVVDEY 163 LEG F D +V + VH QV D AR K + + + P + +++ Sbjct: 123 LEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQF 175
>PLK3_HUMAN (Q9H4B4) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) (Proliferation-related kinase) Length = 646 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 107 TKLVLCSWRSIYLMFNQQFRSACTSL 30 TKL+L W + + F + RSACT L Sbjct: 591 TKLILSGWEPLLVTFVARNRSACTYL 616 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,417,681 Number of Sequences: 219361 Number of extensions: 900312 Number of successful extensions: 2368 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2362 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
