>MBD4_MOUSE (Q9Z2D7) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Mismatch-specific DNA
           N-glycosylase)
          Length = 554

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 335 DAYAIFCSGRAREVVPDDHKLVDYWNYV 252
           D+Y IFC    ++V P+DHKL  Y +++
Sbjct: 517 DSYRIFCVNEWKQVHPEDHKLNKYHDWL 544

>MBD4_HUMAN (O95243) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Methyl-CpG-binding
           endonuclease 1) (Mismatch-specific DNA N-glycosylase)
          Length = 580

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 335 DAYAIFCSGRAREVVPDDHKLVDYWNYV 252
           D+Y IFC    ++V P+DHKL  Y +++
Sbjct: 543 DSYRIFCVNEWKQVHPEDHKLNKYHDWL 570

>GLNA2_MYCTU (P64245) Probable glutamine synthetase 2 (EC 6.3.1.2)|
           (Glutamate--ammonia ligase 2)
          Length = 446

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 VPWATQSRHNSSNQLTCDHQVPPPSP 307
           +PWAT S H+ S ++ CD  +P  SP
Sbjct: 79  LPWATSSGHHHSARMFCDITMPDGSP 104

>GLNA2_MYCBO (P64246) Probable glutamine synthetase 2 (EC 6.3.1.2)|
           (Glutamate--ammonia ligase 2)
          Length = 446

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 VPWATQSRHNSSNQLTCDHQVPPPSP 307
           +PWAT S H+ S ++ CD  +P  SP
Sbjct: 79  LPWATSSGHHHSARMFCDITMPDGSP 104

>PHF1_MOUSE (Q9Z1B8) PHD finger protein 1 (PHF1 protein) (T-complex|
           testis-expressed 3) (Polycomblike 1) (mPCl1)
          Length = 559

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 233 PWATQSRHNSSNQLTCDHQVPPPSPYPNK 319
           P A  SRH S  Q      V PP P PN+
Sbjct: 390 PTAAHSRHGSREQRALQASVSPPPPSPNQ 418

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = +2

Query: 116 PTPVAL*NYPIQDCMAPPSTAASPCTSLNIYWN*TNPSVPWATQSRHNSSNQLTCDHQVP 295
           P+PV     P+    APPS A SP  S         P+ P  + S   S +        P
Sbjct: 311 PSPVPPSPAPVPPSPAPPSPAPSPPPS---------PAPPTPSPSPSPSPSPSPSPSPSP 361

Query: 296 PPSPYPNKI 322
            PSP P+ I
Sbjct: 362 SPSPSPSPI 370

>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 3 homolog
          Length = 692

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 164 PPSTAASPCTSLNIYWN*TNPSVPWATQSRHNSSNQLT-CDHQVPPPSPYP 313
           PP+T  SP  S  +  + +NP+V   T  R  + N L   D +  P +P P
Sbjct: 411 PPTTTGSPTPSSRVVMSPSNPTVFKITVGRAPTENLLNIVDQEQHPSTPEP 461

>GCN2_YEAST (P15442) Serine/threonine-protein kinase GCN2 (EC 2.7.11.1)|
          Length = 1590

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = +2

Query: 218  TNPSVPWATQSR-------HNSSNQLTCDHQVPPPSPYPN 316
            +NPS PW  Q R       ++ +N +  D+ VP  +P+ N
Sbjct: 929  SNPSSPWQQQVRESLFNQSYSLTNDILFDNSVPTSTPFAN 968

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
 Frame = +2

Query: 89   YPRYMNHTKPTPVAL*NYPIQDCMAPPSTAASPCTSLNIYWN*TNPSVPWATQSRHNSSN 268
            Y R+ N+TK       N    DC+ P     S C +    W   +PS P    S   +  
Sbjct: 4611 YHRFGNNTKGQCGTCTNTTSDDCILPSGEIVSNCEAAADQWLVNDPSKPHCPHSSSTTKR 4670

Query: 269  QL--------TCDHQVPPPSP 307
                      T  H+   PSP
Sbjct: 4671 PAVTVPGGGKTTPHKDCTPSP 4691

>AREA_GIBFU (P78688) Nitrogen regulatory protein areA|
          Length = 971

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 221 NPSVPWATQSRHNSSNQLTCDHQVPPPSPYPNKILHKH 334
           N SVP A+ S +N+++    D   PP S YP+ +   H
Sbjct: 385 NSSVPSASMSNNNNNS----DFYSPPASAYPSNVSTPH 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,871,842
Number of Sequences: 219361
Number of extensions: 1012940
Number of successful extensions: 2832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2831
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)