ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 35 0.044
2CUBN_CANFA (Q9TU53) Cubilin precursor 29 3.2
3WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7... 29 3.2
4MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like... 28 4.1
5XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonu... 28 7.1
6PGLR1_MAIZE (P26216) Exopolygalacturonase precursor (EC 3.2.1.67... 28 7.1
7GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit ... 28 7.1
8PGLR2_MAIZE (P35338) Exopolygalacturonase precursor (EC 3.2.1.67... 27 9.2
9HEMO_RABIT (P20058) Hemopexin precursor 27 9.2
10Y1195_ZYMMO (Q5NN91) UPF0078 membrane protein ZMO1195 27 9.2

>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 372 IPTRPPGFADSFTSADGR 319
           IPTRP GFA+SFTS DGR
Sbjct: 925 IPTRPYGFAESFTSVDGR 942



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>CUBN_CANFA (Q9TU53) Cubilin precursor|
          Length = 3620

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 123  GLPGNF*SKGHINTYMIKGELTWHATTRP 209
            G  G+F S G+ NTY    E  W+ TT P
Sbjct: 1394 GTTGSFSSPGYPNTYPPNKECIWYITTAP 1422



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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1243

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 206 PCGGMPC*LSFDHVCIDVAFTLEIP 132
           P GG+P  L+  H+C+  AF L IP
Sbjct: 604 PPGGVPSSLAESHLCLPSAFALSIP 628



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>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +2

Query: 167 HDQRRANM---ACHH---KAKSSNIFKGREGGRGVEEAKGMNEQNDHLTGASDVAVYLPS 328
           H QR   +   AC H    A  + I  G  GG  +E+A G N Q   LTG   V++   S
Sbjct: 286 HTQREGEVKIIACQHLFSSAAGAGIHDGSIGGT-IEQANGQNLQKAVLTGGILVSIVFLS 344

Query: 329 A 331
           A
Sbjct: 345 A 345



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>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)|
            (Exonuclease II) (Exo II) (p140)
          Length = 1328

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 152  PHQYIHDQR-RANMACHHKAKSSNIFKGREGGRGVE-EAKGMNEQNDHL 292
            P   IH  + + +   HH    +   +GR G RG    +K +N ++DH+
Sbjct: 1270 PESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHI 1318



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>PGLR1_MAIZE (P26216) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)|
           (Pectinase) (Galacturan 1,4-alpha-galacturonidase)
          Length = 410

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 14  LTMDQINVEYKPTNPKTI 67
           +TMD +NVEY  TN KT+
Sbjct: 373 VTMDDVNVEYSGTNNKTM 390



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>GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 497

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 23  DQINVEYKPTNPKTIFYLGSKLT 91
           +Q++V   PT P T F LG K+T
Sbjct: 412 EQVDVLVSPTTPSTAFKLGDKIT 434



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>PGLR2_MAIZE (P35338) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)|
           (Pectinase) (Galacturan 1,4-alpha-galacturonidase)
          Length = 410

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  TMDQINVEYKPTNPKTI 67
           TMD +NVEY  TN KT+
Sbjct: 374 TMDDVNVEYSGTNNKTM 390



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>HEMO_RABIT (P20058) Hemopexin precursor|
          Length = 460

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 GHINTYMIKGELTWHATTRPNPATFLKA 233
           GH + Y+IKG+  W  T+  N   + K+
Sbjct: 106 GHTSVYLIKGDKVWVYTSEKNEKVYPKS 133



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>Y1195_ZYMMO (Q5NN91) UPF0078 membrane protein ZMO1195|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 221 IFKGREGGRGVEEAKGMNEQNDHLTGASDVAVYLPSAEVKESANPGGLVG 370
           ++ G  GG+GV    G++     + G      +L SA++   ++ GG+VG
Sbjct: 114 VWLGFRGGKGVATMLGVSFAAWWVAGVVFAVAWLLSAKISRYSSVGGMVG 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,241,895
Number of Sequences: 219361
Number of extensions: 826473
Number of successful extensions: 2296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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