ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KGUA_ONYPE (P60554) Guanylate kinase (EC 2.7.4.8) (GMP kinase) 28 5.5
2GLGB_VIBCH (Q9KNE8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 28 5.5

>KGUA_ONYPE (P60554) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 212

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 173 LLGIFIGGDGVGSAAVTSVSFSLTDFNFILS 81
           LL +  G  GVG A V    F +T+ NF+ S
Sbjct: 8   LLIVLSGPSGVGKATVRKALFEMTNHNFVYS 38



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>GLGB_VIBCH (Q9KNE8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 666

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
 Frame = -3

Query: 249 SKHYACCDLLVRSDETTSAISSE----------PPLARNFYWW 151
           +K Y   D  V  D +T AISSE          PPLA  FY W
Sbjct: 621 AKQYNGSDYPVLQDVSTEAISSEGLDQSLLLSVPPLATLFYQW 663


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,405,831
Number of Sequences: 219361
Number of extensions: 639955
Number of successful extensions: 1155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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