ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 50 0.006
2gb|AC090524.1|AC090524 Caenorhabditis briggsae cosmid CB019H23, ... 46 0.087
3gb|AC153796.1| Mus musculus 6 BAC RP23-296F15 (Roswell Park Canc... 46 0.087
4gb|AC155847.3| Mus musculus 6 BAC RP24-158J4 (Roswell Park Cance... 46 0.087
5dbj|AK071863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
6tpe|BN000070.1|CSA000070 TPA: TPA_inf: Ciona savignyi gene for a... 42 1.4
7gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 40 5.4
8emb|AL627213.16| Mouse DNA sequence from clone RP23-29B10 on chr... 40 5.4
9emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in... 40 5.4
10emb|BX537344.8| Zebrafish DNA sequence from clone RP71-34B6 in l... 40 5.4
11gb|AY079200.1| Salmonella enteritidis serovar Enteritidis plasmi... 40 5.4
12gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, c... 40 5.4
13gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana... 40 5.4
14emb|BX649602.5| Zebrafish DNA sequence from clone CH211-57E5 in ... 40 5.4
15dbj|BS000017.1| Pan troglodytes chromosome 22 clone:RP43-146M04,... 40 5.4
16emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in... 40 5.4
17emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 5.4
18emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-8... 40 5.4
19emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in... 40 5.4
20emb|BX510342.7| Zebrafish DNA sequence from clone DKEY-15I15 in ... 40 5.4
21emb|AL122013.5|CNS01DSU Human chromosome 14 DNA sequence BAC R-2... 40 5.4
22emb|BX005066.3| Zebrafish DNA sequence from clone CH211-152F23 i... 40 5.4

>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 62     agcatacacacaataagctataagt 86
              |||||||||||||||||||||||||
Sbjct: 364284 agcatacacacaataagctataagt 364308



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>gb|AC090524.1|AC090524 Caenorhabditis briggsae cosmid CB019H23, complete sequence
          Length = 103244

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 133  aacatcttcaacaagcttcataacagg 159
            |||| ||||||||||||||||||||||
Sbjct: 7649 aacaacttcaacaagcttcataacagg 7623



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>gb|AC153796.1| Mus musculus 6 BAC RP23-296F15 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 165975

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 66   tacacacaataagctataagtaacagt 92
            ||||||||||||| |||||||||||||
Sbjct: 9627 tacacacaataagatataagtaacagt 9653



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>gb|AC155847.3| Mus musculus 6 BAC RP24-158J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151171

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 66    tacacacaataagctataagtaacagt 92
             ||||||||||||| |||||||||||||
Sbjct: 96673 tacacacaataagatataagtaacagt 96699



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>dbj|AK071863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122I17, full
           insert sequence
          Length = 1238

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   agaccaaagttacgaaatcat 21
           |||||||||||||||||||||
Sbjct: 462 agaccaaagttacgaaatcat 442



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>tpe|BN000070.1|CSA000070 TPA: TPA_inf: Ciona savignyi gene for acetylcholinesterase, exons
           1-9
          Length = 10710

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 351 tccgaatttctagccttccac 371
           |||||||||||||||||||||
Sbjct: 649 tccgaatttctagccttccac 629



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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 262    tttacaaccaccaagctcaaaacctttc 289
              |||||||||| || ||||||||||||||
Sbjct: 590208 tttacaaccagcaggctcaaaacctttc 590181



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>emb|AL627213.16| Mouse DNA sequence from clone RP23-29B10 on chromosome 11 Contains the
             5' end of a novel gene, complete sequence
          Length = 257664

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   caaaacctttctgacttatg 298
             ||||||||||||||||||||
Sbjct: 51029 caaaacctttctgacttatg 51010



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>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17,
             complete sequence
          Length = 154593

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 127   cgagccaacatcttcaacaagcttcata 154
             |||||||||||||| ||| |||||||||
Sbjct: 69849 cgagccaacatcttaaaccagcttcata 69822



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>emb|BX537344.8| Zebrafish DNA sequence from clone RP71-34B6 in linkage group 2,
             complete sequence
          Length = 174019

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 127   cgagccaacatcttcaacaagcttcata 154
             |||||||||||||||||| ||| |||||
Sbjct: 37768 cgagccaacatcttcaaccagcgtcata 37741



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>gb|AY079200.1| Salmonella enteritidis serovar Enteritidis plasmid pK, complete
            sequence
          Length = 4245

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  ccaagctcaaaacctttctg 291
            ||||||||||||||||||||
Sbjct: 2690 ccaagctcaaaacctttctg 2671



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>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    cttggaaagacgacacttcc 330
              ||||||||||||||||||||
Sbjct: 132258 cttggaaagacgacacttcc 132277



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>gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I,
             complete sequence
          Length = 82875

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   acttatgttgctgaatttac 311
             ||||||||||||||||||||
Sbjct: 26027 acttatgttgctgaatttac 26046



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>emb|BX649602.5| Zebrafish DNA sequence from clone CH211-57E5 in linkage group 18,
            complete sequence
          Length = 192182

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 127  cgagccaacatcttcaacaagcttcata 154
            |||||||||||||| ||||| |||||||
Sbjct: 2665 cgagccaacatcttaaacaaacttcata 2638



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>dbj|BS000017.1| Pan troglodytes chromosome 22 clone:RP43-146M04, map 22, complete
            sequences
          Length = 30368

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  ttgctgaatttacttggaaa 318
            ||||||||||||||||||||
Sbjct: 4444 ttgctgaatttacttggaaa 4425



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>emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in linkage group 17,
            complete sequence
          Length = 242955

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   atacacacaataagctataa 84
            ||||||||||||||||||||
Sbjct: 3347 atacacacaataagctataa 3366



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>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ccaacatcttcaacaagctt 150
             ||||||||||||||||||||
Sbjct: 29675 ccaacatcttcaacaagctt 29656



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>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172914

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    ccaacatcttcaacaagctt 150
              ||||||||||||||||||||
Sbjct: 131098 ccaacatcttcaacaagctt 131079



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>emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in linkage group 18,
             complete sequence
          Length = 80589

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 127   cgagccaacatcttcaacaagcttcata 154
             |||||||||||||| ||||| |||||||
Sbjct: 77812 cgagccaacatcttaaacaaacttcata 77839



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>emb|BX510342.7| Zebrafish DNA sequence from clone DKEY-15I15 in linkage group 2,
             complete sequence
          Length = 186711

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 127   cgagccaacatcttcaacaagcttcata 154
             |||||||||||||||||| ||| |||||
Sbjct: 38955 cgagccaacatcttcaaccagcgtcata 38928



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>emb|AL122013.5|CNS01DSU Human chromosome 14 DNA sequence BAC R-204K16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173010

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 262   tttacaaccaccaagctcaaaacctttc 289
             |||||||||| || ||||||||||||||
Sbjct: 51121 tttacaaccagcaggctcaaaacctttc 51148



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>emb|BX005066.3| Zebrafish DNA sequence from clone CH211-152F23 in linkage group 3,
             complete sequence
          Length = 172909

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 127   cgagccaacatcttcaacaagcttcata 154
             |||||||||||||| ||||||| |||||
Sbjct: 76920 cgagccaacatcttaaacaagcatcata 76947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,226,800
Number of Sequences: 3902068
Number of extensions: 3226800
Number of successful extensions: 71312
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71261
Number of HSP's gapped (non-prelim): 51
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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