Clone Name | rbastl54d12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 62 agcatacacacaataagctataagt 86 ||||||||||||||||||||||||| Sbjct: 364284 agcatacacacaataagctataagt 364308
>gb|AC090524.1|AC090524 Caenorhabditis briggsae cosmid CB019H23, complete sequence Length = 103244 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Minus Query: 133 aacatcttcaacaagcttcataacagg 159 |||| |||||||||||||||||||||| Sbjct: 7649 aacaacttcaacaagcttcataacagg 7623
>gb|AC153796.1| Mus musculus 6 BAC RP23-296F15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 165975 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 66 tacacacaataagctataagtaacagt 92 ||||||||||||| ||||||||||||| Sbjct: 9627 tacacacaataagatataagtaacagt 9653
>gb|AC155847.3| Mus musculus 6 BAC RP24-158J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151171 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 66 tacacacaataagctataagtaacagt 92 ||||||||||||| ||||||||||||| Sbjct: 96673 tacacacaataagatataagtaacagt 96699
>dbj|AK071863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122I17, full insert sequence Length = 1238 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 agaccaaagttacgaaatcat 21 ||||||||||||||||||||| Sbjct: 462 agaccaaagttacgaaatcat 442
>tpe|BN000070.1|CSA000070 TPA: TPA_inf: Ciona savignyi gene for acetylcholinesterase, exons 1-9 Length = 10710 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 tccgaatttctagccttccac 371 ||||||||||||||||||||| Sbjct: 649 tccgaatttctagccttccac 629
>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds Length = 660392 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 tttacaaccaccaagctcaaaacctttc 289 |||||||||| || |||||||||||||| Sbjct: 590208 tttacaaccagcaggctcaaaacctttc 590181
>emb|AL627213.16| Mouse DNA sequence from clone RP23-29B10 on chromosome 11 Contains the 5' end of a novel gene, complete sequence Length = 257664 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 caaaacctttctgacttatg 298 |||||||||||||||||||| Sbjct: 51029 caaaacctttctgacttatg 51010
>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17, complete sequence Length = 154593 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||| ||| ||||||||| Sbjct: 69849 cgagccaacatcttaaaccagcttcata 69822
>emb|BX537344.8| Zebrafish DNA sequence from clone RP71-34B6 in linkage group 2, complete sequence Length = 174019 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||||||| ||| ||||| Sbjct: 37768 cgagccaacatcttcaaccagcgtcata 37741
>gb|AY079200.1| Salmonella enteritidis serovar Enteritidis plasmid pK, complete sequence Length = 4245 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ccaagctcaaaacctttctg 291 |||||||||||||||||||| Sbjct: 2690 ccaagctcaaaacctttctg 2671
>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence Length = 205069 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cttggaaagacgacacttcc 330 |||||||||||||||||||| Sbjct: 132258 cttggaaagacgacacttcc 132277
>gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence Length = 82875 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 acttatgttgctgaatttac 311 |||||||||||||||||||| Sbjct: 26027 acttatgttgctgaatttac 26046
>emb|BX649602.5| Zebrafish DNA sequence from clone CH211-57E5 in linkage group 18, complete sequence Length = 192182 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||| ||||| ||||||| Sbjct: 2665 cgagccaacatcttaaacaaacttcata 2638
>dbj|BS000017.1| Pan troglodytes chromosome 22 clone:RP43-146M04, map 22, complete sequences Length = 30368 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ttgctgaatttacttggaaa 318 |||||||||||||||||||| Sbjct: 4444 ttgctgaatttacttggaaa 4425
>emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in linkage group 17, complete sequence Length = 242955 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atacacacaataagctataa 84 |||||||||||||||||||| Sbjct: 3347 atacacacaataagctataa 3366
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171699 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ccaacatcttcaacaagctt 150 |||||||||||||||||||| Sbjct: 29675 ccaacatcttcaacaagctt 29656
>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172914 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ccaacatcttcaacaagctt 150 |||||||||||||||||||| Sbjct: 131098 ccaacatcttcaacaagctt 131079
>emb|BX470257.13| Zebrafish DNA sequence from clone DKEY-99O15 in linkage group 18, complete sequence Length = 80589 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||| ||||| ||||||| Sbjct: 77812 cgagccaacatcttaaacaaacttcata 77839
>emb|BX510342.7| Zebrafish DNA sequence from clone DKEY-15I15 in linkage group 2, complete sequence Length = 186711 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||||||| ||| ||||| Sbjct: 38955 cgagccaacatcttcaaccagcgtcata 38928
>emb|AL122013.5|CNS01DSU Human chromosome 14 DNA sequence BAC R-204K16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173010 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 262 tttacaaccaccaagctcaaaacctttc 289 |||||||||| || |||||||||||||| Sbjct: 51121 tttacaaccagcaggctcaaaacctttc 51148
>emb|BX005066.3| Zebrafish DNA sequence from clone CH211-152F23 in linkage group 3, complete sequence Length = 172909 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 cgagccaacatcttcaacaagcttcata 154 |||||||||||||| ||||||| ||||| Sbjct: 76920 cgagccaacatcttaaacaagcatcata 76947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,226,800 Number of Sequences: 3902068 Number of extensions: 3226800 Number of successful extensions: 71312 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71261 Number of HSP's gapped (non-prelim): 51 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)