ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEF5_GVCL (P41727) Late expression factor 5 homolog 29 3.4
2KPC1B_CAEEL (P34885) Protein kinase C-like 1B (EC 2.7.11.13) (PK... 28 5.8
3ABCG8_MOUSE (Q9DBM0) ATP-binding cassette sub-family G member 8 ... 27 10.0
4UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase... 27 10.0

>LEF5_GVCL (P41727) Late expression factor 5 homolog|
          Length = 240

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 96  VRSQNIDSPPLFTPRRQLIQDAYLLHGSIRWVNSLSQTLTRL*AQTTKCTKSQYNM 263
           ++++N DS P    +  +  D+ L   SI W NSL++  +   + TTK ++ + NM
Sbjct: 130 LKNKNFDSKPCKLKKEPI--DSILFKYSINWKNSLNKKRSLPKSTTTKKSEEKENM 183



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>KPC1B_CAEEL (P34885) Protein kinase C-like 1B (EC 2.7.11.13) (PKC1B)|
          Length = 707

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 10  FILLSYTHGTAIKFCSRQL**LSLRIANLYARKISTLLPFLHLDDNLYR 156
           F ++ Y +G  + F  ++        A  YA +++  L FLH +D +YR
Sbjct: 453 FFVMEYVNGGDLMFQIQRARKFDESRARFYAAEVTCALQFLHRNDVIYR 501



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>ABCG8_MOUSE (Q9DBM0) ATP-binding cassette sub-family G member 8 (Sterolin-2)|
          Length = 673

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 205 WLSEFTHLMLPWRR*ASCISCRLGVK 128
           W  +     +PWR  +S  SC LG++
Sbjct: 65  WFEQLAQFKIPWRSHSSQDSCELGIR 90



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>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC|
            2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase)
            (UGT)
          Length = 1448

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 87   NPERELSELSRTKFYRCPVCITEEYE 10
            NP++ LSEL  T+FYR  +    E++
Sbjct: 929  NPKQTLSELPLTRFYRYSISAEPEFD 954


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,612,678
Number of Sequences: 219361
Number of extensions: 696880
Number of successful extensions: 1493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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