Clone Name | rbastl54d11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 208 ccctgacacgactataagctcaaactacaaaatgtacaa 246 |||||||| |||||||||| |||||||||||||||||| Sbjct: 36279378 ccctgacatgactataagcaaaaactacaaaatgtacaa 36279340
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 208 ccctgacacgactataagctcaaactacaaaatgtacaa 246 |||||||| |||||||||| |||||||||||||||||| Sbjct: 29255 ccctgacatgactataagcaaaaactacaaaatgtacaa 29217
>dbj|AK103686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136F19, full insert sequence Length = 3527 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 208 ccctgacacgactataagctcaaactacaaaatgtacaa 246 |||||||| |||||||||| |||||||||||||||||| Sbjct: 3272 ccctgacatgactataagcaaaaactacaaaatgtacaa 3234
>dbj|AK099801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098A15, full insert sequence Length = 3958 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 208 ccctgacacgactataagctcaaactacaaaatgtacaa 246 |||||||| |||||||||| |||||||||||||||||| Sbjct: 3696 ccctgacatgactataagcaaaaactacaaaatgtacaa 3658
>gb|AC115834.8| Mus musculus chromosome 3, clone RP24-159L1, complete sequence Length = 175998 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 gctcaaactacaaaatgtacaa 246 |||||||||||||||||||||| Sbjct: 65002 gctcaaactacaaaatgtacaa 64981
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 ataagctcaaactacaaaatg 241 ||||||||||||||||||||| Sbjct: 134735 ataagctcaaactacaaaatg 134755
>gb|AC079465.5| Homo sapiens chromosome 5 clone CTD-2124P24, complete sequence Length = 184585 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 ataagctcaaactacaaaatg 241 ||||||||||||||||||||| Sbjct: 134779 ataagctcaaactacaaaatg 134759
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 tctctcaggattgcaaatttg 96 ||||||||||||||||||||| Sbjct: 2088891 tctctcaggattgcaaatttg 2088911
>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence Length = 186062 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tcaatacaacatgtttattt 270 |||||||||||||||||||| Sbjct: 62693 tcaatacaacatgtttattt 62674
>emb|AJ544216.1|SSC544216 Sus scrofa microsatellite DNA, clone 219A3 Length = 330 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agctctgatagctctctctc 81 |||||||||||||||||||| Sbjct: 189 agctctgatagctctctctc 208
>ref|XM_805566.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508567.40) partial mRNA Length = 876 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cttctccacggcagcatcag 184 |||||||||||||||||||| Sbjct: 585 cttctccacggcagcatcag 566
>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence Length = 134242 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 caatacaacatgtttatttc 271 |||||||||||||||||||| Sbjct: 45032 caatacaacatgtttatttc 45051
>emb|BX530085.3| Zebrafish DNA sequence from clone DKEY-18A21 in linkage group 14, complete sequence Length = 227326 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 agctctctctcaggattgca 90 |||||||||||||||||||| Sbjct: 201483 agctctctctcaggattgca 201464
>gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, complete sequence Length = 195369 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tgcaaaagcccaaaagaagg 301 |||||||||||||||||||| Sbjct: 29392 tgcaaaagcccaaaagaagg 29411
>emb|BX323465.7| Zebrafish DNA sequence from clone DKEYP-9C6 in linkage group 14, complete sequence Length = 174182 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 agctctctctcaggattgca 90 |||||||||||||||||||| Sbjct: 145264 agctctctctcaggattgca 145245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,729,432 Number of Sequences: 3902068 Number of extensions: 2729432 Number of successful extensions: 55318 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55260 Number of HSP's gapped (non-prelim): 54 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)