ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E137_ARATH (Q9M069) Putative glucan endo-1,3-beta-glucosidase 7 ... 32 0.42
2YM67_CAEEL (P34528) Putative serine protease K12H4.7 precursor (... 31 0.71
3RAIA_SHIFL (P0AD52) Ribosome-associated inhibitor A 30 1.6
4RAIA_ECOLI (P0AD49) Ribosome-associated inhibitor A (Protein Y) ... 30 1.6
5RAIA_ECOL6 (P0AD50) Ribosome-associated inhibitor A 30 1.6
6RAIA_ECO57 (P0AD51) Ribosome-associated inhibitor A 30 1.6
7TOLB_DESVH (Q726K4) Protein tolB precursor 28 7.9

>E137_ARATH (Q9M069) Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 356

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +2

Query: 122 FTQTNYSFFVYESDPGPINFRFCFFFA*LQPEERRMGQKKTQPRRLANDITHAA 283
           F    Y FF Y+SDP P    FC F       + + G K T       D  H+A
Sbjct: 196 FAINPYPFFAYQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSA 249



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>YM67_CAEEL (P34528) Putative serine protease K12H4.7 precursor (EC 3.4.-.-)|
          Length = 510

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 40  WALHITYRVVRHGSIHPSTNI*LPN--YIIYTNELQFLRLRVRPGTHQFPLLLLLRIVTT 213
           W   I +R   +G  HP++++ +PN  Y+     ++     ++  T +FP L   + VT 
Sbjct: 127 WVFDIEHRF--YGETHPTSDMSVPNLKYLSSAQAIEDAAAFIKAMTAKFPQLANAKWVTF 184

Query: 214 GGKEDGA 234
           GG   GA
Sbjct: 185 GGSYSGA 191



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>RAIA_SHIFL (P0AD52) Ribosome-associated inhibitor A|
          Length = 112

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  TYNIQSRQARIHPSIHQHLATKLYHLHK 131
           T NI S+Q  I P+I QH+A +L  L K
Sbjct: 1   TMNITSKQMEITPAIRQHVADRLAKLEK 28



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>RAIA_ECOLI (P0AD49) Ribosome-associated inhibitor A (Protein Y) (SpotY) (pY)|
          Length = 112

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  TYNIQSRQARIHPSIHQHLATKLYHLHK 131
           T NI S+Q  I P+I QH+A +L  L K
Sbjct: 1   TMNITSKQMEITPAIRQHVADRLAKLEK 28



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>RAIA_ECOL6 (P0AD50) Ribosome-associated inhibitor A|
          Length = 112

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  TYNIQSRQARIHPSIHQHLATKLYHLHK 131
           T NI S+Q  I P+I QH+A +L  L K
Sbjct: 1   TMNITSKQMEITPAIRQHVADRLAKLEK 28



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>RAIA_ECO57 (P0AD51) Ribosome-associated inhibitor A|
          Length = 112

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  TYNIQSRQARIHPSIHQHLATKLYHLHK 131
           T NI S+Q  I P+I QH+A +L  L K
Sbjct: 1   TMNITSKQMEITPAIRQHVADRLAKLEK 28



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>TOLB_DESVH (Q726K4) Protein tolB precursor|
          Length = 456

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 2   DLTIPNLFSLSKHGHYI*HTESSGTDPSIHPPTSSYQTISFTQTNYSFFVYE 157
           D+T   +  +SK G Y        T+PSI P  +       T T +  FVY+
Sbjct: 342 DMTTGQVTRISKTGSY-------NTEPSISPDGTLVAFTKMTDTGHRIFVYD 386


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,296,304
Number of Sequences: 219361
Number of extensions: 782284
Number of successful extensions: 1719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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