>ATG3_NEUCR (Q7SDY2) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme atg-3)
          Length = 352

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 34  NSSREYGFAPSQSIYTVHVTYRKKEQSPGKYRTPCISNGEAL 159
           NS+R+   +  +  YT+++TY    + P  Y +  +SNG+ L
Sbjct: 165 NSNRQDNISTGKRTYTLYITYANAYKCPRMYMSGYLSNGQPL 206

>SMBT2_MOUSE (Q5DTW2) Scm-like with four MBT domains protein 2|
          Length = 938

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = -2

Query: 255 PHLVCVLPP-------TLSTSYCIPA*FMSHLC 178
           PH +C+LPP        ++  YC P  F++H C
Sbjct: 505 PHELCLLPPQMDSPVGAINAKYCCPQLFVNHRC 537

>KREM2_HUMAN (Q8NCW0) Kremen protein 2 precursor (Kringle-containing protein|
           marking the eye and the nose) (Kringle domain-containing
           transmembrane protein 2) (Dickkopf receptor 2)
          Length = 462

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 304 RPARRRRCEYQLQPGRSPPGVRASSHPQ 221
           RP RRR C   L PG+ PP + AS  P+
Sbjct: 388 RPLRRRSC--LLAPGKGPPALGASRGPR 413

>SYM_CHLAB (Q5L5M3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 551

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -1

Query: 223 QHLLLHTGLIHEPPLCHYDSCLEPPHLRYKVFCICLETVPFFYRLHARCILIDLVQIRIL 44
           +H  LH   + EP L + D+C  P H+R  V         +   L  R I  DL      
Sbjct: 187 EHAFLHLERMVEPLLAYIDTCYLPEHIRKFV-------TDYIKNLRPRAITRDL------ 233

Query: 43  VMSWG 29
             SWG
Sbjct: 234 --SWG 236

>DPO3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1179

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/84 (22%), Positives = 37/84 (44%)
 Frame = +2

Query: 2   RAIQMSRVKPPTHHENTDLHQVNQYTPCM*PIEKRNSLQANTEHLVSQMGRL*AAIVMAQ 181
           + I ++ +  PTH   ++  ++         ++K        E LV QMG   A ++M+ 
Sbjct: 486 KGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVEGLVRQMGVHAAGVIMSS 545

Query: 182 RWLMNQAGMQ*EVLRVGGSTHTRW 253
             +++ A +   V    G T T+W
Sbjct: 546 EPIVDHAPIW--VRHTDGVTITQW 567

>PTC1_BRARE (Q98864) Protein patched homolog 1 (Patched 1) (PTC1)|
          Length = 1220

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 270 CNPAGPHLVCVLPPTLSTSYCIPA*FMS 187
           C+ AG H+V +LPPT   S   P+  +S
Sbjct: 648 CDAAGQHIVTILPPTSQISTTPPSMVLS 675

>ZBT37_HUMAN (Q5TC79) Zinc finger and BTB domain-containing protein 37|
          Length = 503

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 4   GNSNVEG*TPNSSREYGFAPSQSIYTVHVTYRKKEQSPGKYRTP 135
           G+S  +   P SS    F+PS S+  +   +R + +SPG+   P
Sbjct: 292 GSSGAKVARPTSSEVDRFSPSGSVVPLTERHRARSESPGRMDEP 335

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 296  PT*AMRISAATRQVPTWCACFLPPSAPP 213
            P+    +SA+ + VPT  A  LPP+ PP
Sbjct: 1070 PSSLATVSASVQSVPTQTATLLPPANPP 1097

>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 708

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 34  NSSREYGFAPSQSIYTVH 87
           ++ R+YGF PS+++YT H
Sbjct: 264 DTDRKYGFCPSENLYTEH 281

>DCR1A_HUMAN (Q6PJP8) DNA cross-link repair 1A protein (hSNM1) (hSNM1A)|
          Length = 1040

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 205 TGLIHEPPLCHYDSCLEPPHLRYKVFC----ICLETVPFFYRLHARCIL 71
           + LI + P  H   CL+ P  R +  C    +C  T+PF Y+ +   +L
Sbjct: 130 SSLIGQTPRWHVFECLDSPP-RSETECPDGLLCTSTIPFHYKRYTHFLL 177

>SYTL5_MOUSE (Q80T23) Synaptotagmin-like protein 5|
          Length = 753

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 28  TPNSSREYGFAPSQSIYTVHVTYRK--KEQSPGKYRTPCIS-NGEALSSYRNGTEV 186
           T  +SRE+GF  S ++ T+  T  +  K        TP I+ +G +LSS R+ +EV
Sbjct: 272 TSINSREHGFENSMALATIENTCEELTKSHRRNTSGTPSIAVSGTSLSSERSRSEV 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,307,059
Number of Sequences: 219361
Number of extensions: 1128466
Number of successful extensions: 2931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)