ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
2dbj|AK104059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
3dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
5emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb... 113 3e-22
6gb|AY108565.1| Zea mays PCO103773 mRNA sequence 62 1e-06
7gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, c... 46 0.065
8emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on ch... 40 4.0
9gb|AY045526.1| Panthera tigris sumatrae clone 6HDZ859 microsatel... 40 4.0
10dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 4.0
11gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 40 4.0
12gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, co... 40 4.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 3e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 195      atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 254
                ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 22552918 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22552977

                                                                 
Query: 255      gacctgccgggttgcagctgatattcgcatcgcctacgtcgggcaggcc 303
                | |||||||||||||||||||| || || ||||| ||||  ||||||||
Sbjct: 22552978 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcc 22553026
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>dbj|AK104059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F12, full
            insert sequence
          Length = 1492

 Score =  113 bits (57), Expect = 3e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 195  atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 254
            ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 1197 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 1138

                                                             
Query: 255  gacctgccgggttgcagctgatattcgcatcgcctacgtcgggcaggcc 303
            | |||||||||||||||||||| || || ||||| ||||  ||||||||
Sbjct: 1137 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcc 1089
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>dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049N15, full
            insert sequence
          Length = 4187

 Score =  113 bits (57), Expect = 3e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 195  atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 254
            ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 3926 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 3867

                                                             
Query: 255  gacctgccgggttgcagctgatattcgcatcgcctacgtcgggcaggcc 303
            | |||||||||||||||||||| || || ||||| ||||  ||||||||
Sbjct: 3866 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcc 3818
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 3e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 195      atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 254
                ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 22481263 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22481322

                                                                 
Query: 255      gacctgccgggttgcagctgatattcgcatcgcctacgtcgggcaggcc 303
                | |||||||||||||||||||| || || ||||| ||||  ||||||||
Sbjct: 22481323 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcc 22481371
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>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131441

 Score =  113 bits (57), Expect = 3e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 195   atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 254
             ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 55497 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 55556

                                                              
Query: 255   gacctgccgggttgcagctgatattcgcatcgcctacgtcgggcaggcc 303
             | |||||||||||||||||||| || || ||||| ||||  ||||||||
Sbjct: 55557 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcc 55605
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>gb|AY108565.1| Zea mays PCO103773 mRNA sequence
          Length = 749

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 203 ggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggggacctgcc 262
           ||||| |||||||| ||||||| ||  |||||||| || ||||||||||| || ||||| 
Sbjct: 544 ggtatacagtaggatgtgctgatggctggaggaaggacacacaccaggtgaggccctgct 485

                      
Query: 263 gggttgcagct 273
           |||||||||||
Sbjct: 484 gggttgcagct 474
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>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 99     aaaaaaggaacagtctccaggca 121
              |||||||||||||||||||||||
Sbjct: 149290 aaaaaaggaacagtctccaggca 149312
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>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete
              sequence
          Length = 234055

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    cagaacaccttgtatctcaaatgg 149
              ||||||||||||||||||| ||||
Sbjct: 139832 cagaacaccttgtatctcagatgg 139855
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>gb|AY045526.1| Panthera tigris sumatrae clone 6HDZ859 microsatellite sequence
          Length = 267

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  aaaaaaggaacagtctccag 118
           ||||||||||||||||||||
Sbjct: 5   aaaaaaggaacagtctccag 24
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      taacctatagaaaaaaggaa 108
               ||||||||||||||||||||
Sbjct: 1673187 taacctatagaaaaaaggaa 1673168
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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gaagcacgcacaccaggtgg 253
              ||||||||||||||||||||
Sbjct: 232205 gaagcacgcacaccaggtgg 232186
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>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence
          Length = 159741

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gaagcacgcacaccaggtgg 253
             ||||||||||||||||||||
Sbjct: 87238 gaagcacgcacaccaggtgg 87257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,475,521
Number of Sequences: 3902068
Number of extensions: 2475521
Number of successful extensions: 41039
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41005
Number of HSP's gapped (non-prelim): 34
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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