ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 236 4e-59
2gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 236 4e-59
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 236 4e-59
4dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 4e-59
5gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cance... 44 0.34
6gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Canc... 44 0.34
7gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromos... 42 1.4
8emb|BX548161.12| Zebrafish DNA sequence from clone DKEY-248F6 in... 42 1.4
9gb|AC097639.2| Homo sapiens chromosome 3 clone RP11-384L8, compl... 42 1.4
10gb|AC103558.2| Homo sapiens chromosome 3 clone RP11-46B13, compl... 42 1.4
11gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, com... 42 1.4
12emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in l... 42 1.4
13gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 42 1.4
14gb|AC165953.3| Mus musculus BAC clone RP24-75N14 from chromosome... 40 5.4
15gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cance... 40 5.4
16ref|XM_388668.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.4
17gb|AC115123.4| Mus musculus BAC clone RP24-129O20 from 3, comple... 40 5.4
18gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, comple... 40 5.4
19gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, comp... 40 5.4
20gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete s... 40 5.4
21emb|AL353807.18| Human DNA sequence from clone RP11-29H23 on chr... 40 5.4
22emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in... 40 5.4
23gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, comp... 40 5.4
24gb|AC160137.2| Mus musculus BAC clone RP23-136A1 from chromosome... 40 5.4
25gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 40 5.4
26dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 40 5.4
27gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome... 40 5.4
28emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, ... 40 5.4
29gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, com... 40 5.4
30emb|BX276085.8| Zebrafish DNA sequence from clone CH211-194B5 in... 40 5.4
31dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.4
32dbj|AP001829.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  236 bits (119), Expect = 4e-59
 Identities = 215/247 (87%)
 Strand = Plus / Minus

                                                                            
Query: 156      tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 215
                |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 12443028 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 12442969

                                                                            
Query: 216      ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 275
                ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 12442968 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 12442909

                                                                            
Query: 276      acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 335
                ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 12442908 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 12442849

                                                                            
Query: 336      aactgatgacgtcctccttcccaactgtccttagctcttcagcttccagttttgccatat 395
                ||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 12442848 aactgattacatcctccttccgaactgtccttagctcttcagcttccagttttgacatat 12442789

                       
Query: 396      caaacat 402
                |||||||
Sbjct: 12442788 caaacat 12442782
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score =  236 bits (119), Expect = 4e-59
 Identities = 215/247 (87%)
 Strand = Plus / Minus

                                                                          
Query: 156    tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 215
              |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 100710 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 100651

                                                                          
Query: 216    ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 275
              ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 100650 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 100591

                                                                          
Query: 276    acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 335
              ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 100590 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 100531

                                                                          
Query: 336    aactgatgacgtcctccttcccaactgtccttagctcttcagcttccagttttgccatat 395
              ||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 100530 aactgattacatcctccttccgaactgtccttagctcttcagcttccagttttgacatat 100471

                     
Query: 396    caaacat 402
              |||||||
Sbjct: 100470 caaacat 100464
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  236 bits (119), Expect = 4e-59
 Identities = 215/247 (87%)
 Strand = Plus / Minus

                                                                            
Query: 156      tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 215
                |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 12439791 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 12439732

                                                                            
Query: 216      ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 275
                ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 12439731 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 12439672

                                                                            
Query: 276      acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 335
                ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 12439671 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 12439612

                                                                            
Query: 336      aactgatgacgtcctccttcccaactgtccttagctcttcagcttccagttttgccatat 395
                ||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 12439611 aactgattacatcctccttccgaactgtccttagctcttcagcttccagttttgacatat 12439552

                       
Query: 396      caaacat 402
                |||||||
Sbjct: 12439551 caaacat 12439545
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>dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full
            insert sequence
          Length = 3677

 Score =  236 bits (119), Expect = 4e-59
 Identities = 215/247 (87%)
 Strand = Plus / Minus

                                                                        
Query: 156  tccctcagcagaggtttggataaaattgggacgaaaccttcaaggattcaacatcatcaa 215
            |||||||||||||| | | ||||||||| || ||    ||||||||||  ||||||||||
Sbjct: 3226 tccctcagcagaggctcgaataaaattgagatgattttttcaaggatttgacatcatcaa 3167

                                                                        
Query: 216  ttgcagtccatgactgctcttgcagcttggcagcctcagcaatatcagagttgcaaccat 275
            ||| | |||||||||||||||  |||||||||||||||||||| || |||||||| ||||
Sbjct: 3166 ttgtaatccatgactgctcttttagcttggcagcctcagcaatgtctgagttgcagccat 3107

                                                                        
Query: 276  acacatggattgccaatcgtctacgtgttggagaagatgatcttatgtaggtattgtacc 335
            ||||||||||||| |||||||| ||  | ||||| |||| | | ||||| ||||||||||
Sbjct: 3106 acacatggattgctaatcgtctgcgcttgggagatgatggtttaatgtaagtattgtacc 3047

                                                                        
Query: 336  aactgatgacgtcctccttcccaactgtccttagctcttcagcttccagttttgccatat 395
            ||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 3046 aactgattacatcctccttccgaactgtccttagctcttcagcttccagttttgacatat 2987

                   
Query: 396  caaacat 402
            |||||||
Sbjct: 2986 caaacat 2980
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>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152883

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 23     tttctgtagataattgttttat 44
              ||||||||||||||||||||||
Sbjct: 152165 tttctgtagataattgttttat 152144
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>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136511

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 23    tttctgtagataattgttttat 44
             ||||||||||||||||||||||
Sbjct: 50503 tttctgtagataattgttttat 50524
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>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete
              sequence
          Length = 206618

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 18     atgattttctgtagataattgttttatat 46
              |||||| | ||||||||||||||||||||
Sbjct: 163021 atgattatatgtagataattgttttatat 162993
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>emb|BX548161.12| Zebrafish DNA sequence from clone DKEY-248F6 in linkage group 16,
             complete sequence
          Length = 188754

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tttctgtagataattgtttta 43
             |||||||||||||||||||||
Sbjct: 65723 tttctgtagataattgtttta 65703
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>gb|AC097639.2| Homo sapiens chromosome 3 clone RP11-384L8, complete sequence
          Length = 177384

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    ctcttcagcttccagttttgc 390
              |||||||||||||||||||||
Sbjct: 117952 ctcttcagcttccagttttgc 117972
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>gb|AC103558.2| Homo sapiens chromosome 3 clone RP11-46B13, complete sequence
          Length = 174539

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   ctcttcagcttccagttttgc 390
             |||||||||||||||||||||
Sbjct: 30883 ctcttcagcttccagttttgc 30903
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>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence
          Length = 185221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 18     atgattttctgtagataattgttttatat 46
              |||||| | ||||||||||||||||||||
Sbjct: 137710 atgattatatgtagataattgttttatat 137682
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>emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in linkage group 17,
             complete sequence
          Length = 189563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    attttctgtagataattgttt 41
             |||||||||||||||||||||
Sbjct: 74367 attttctgtagataattgttt 74347
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 197     aaggattcaacatcatcaatt 217
               |||||||||||||||||||||
Sbjct: 1299378 aaggattcaacatcatcaatt 1299398
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>gb|AC165953.3| Mus musculus BAC clone RP24-75N14 from chromosome 17, complete sequence
          Length = 224622

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tcttcagcttccagttttgc 390
             ||||||||||||||||||||
Sbjct: 98896 tcttcagcttccagttttgc 98915
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>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 189477

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gcagcttggcagcctcagca 256
              ||||||||||||||||||||
Sbjct: 156401 gcagcttggcagcctcagca 156420
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>ref|XM_388668.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08492.1)
            partial mRNA
          Length = 1929

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 246  cagcctcagcaatatcagagttgcaacc 273
            ||||| |||||||||||||||| |||||
Sbjct: 1672 cagccacagcaatatcagagttacaacc 1699
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>gb|AC115123.4| Mus musculus BAC clone RP24-129O20 from 3, complete sequence
          Length = 181380

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     attttctgtagataattgtt 40
              ||||||||||||||||||||
Sbjct: 181294 attttctgtagataattgtt 181313
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>gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, complete sequence
          Length = 180015

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gcagcttggcagcctcagca 256
             ||||||||||||||||||||
Sbjct: 25423 gcagcttggcagcctcagca 25442
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>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     attttctgtagataattgtt 40
              ||||||||||||||||||||
Sbjct: 102879 attttctgtagataattgtt 102898
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>gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete sequence
          Length = 148291

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     acatgattttctgtagataa 35
              ||||||||||||||||||||
Sbjct: 106237 acatgattttctgtagataa 106256
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>emb|AL353807.18| Human DNA sequence from clone RP11-29H23 on chromosome 1 Contains the
             5' end of the ASH1L gene for ash1 (absent, small, or
             homeotic)-like (Drosophila), two novel genes, a pseudogene
             similar to part of death associated protein 3 (DAP3), the
             gene for a novel protein (FLJ10504), the 3' end of a novel
             pseudogene and a CpG island, complete sequence
          Length = 179064

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ttttctgtagataattgttt 41
             ||||||||||||||||||||
Sbjct: 14233 ttttctgtagataattgttt 14214
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>emb|BX511084.9| Zebrafish DNA sequence from clone DKEY-265C15 in linkage group 13,
             complete sequence
          Length = 156524

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   accaaacaaacaggatccaa 153
             ||||||||||||||||||||
Sbjct: 52547 accaaacaaacaggatccaa 52528
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>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence
          Length = 166114

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tcagcagaggtttggataaa 179
             ||||||||||||||||||||
Sbjct: 75482 tcagcagaggtttggataaa 75501
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>gb|AC160137.2| Mus musculus BAC clone RP23-136A1 from chromosome 9, complete sequence
          Length = 241917

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   ccaactgtccttagctcttc 375
             ||||||||||||||||||||
Sbjct: 70777 ccaactgtccttagctcttc 70796
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>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tcctccttcccaactgtcct 366
              ||||||||||||||||||||
Sbjct: 206379 tcctccttcccaactgtcct 206360
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 155     ttccctcagcagaggtttggataa 178
               |||||||| |||||||||||||||
Sbjct: 1183556 ttccctcatcagaggtttggataa 1183533
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>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence
          Length = 167726

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    gcagtccatgactgctcttg 237
              ||||||||||||||||||||
Sbjct: 124760 gcagtccatgactgctcttg 124741
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>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   accaaacaaacaggatccaa 153
             ||||||||||||||||||||
Sbjct: 56882 accaaacaaacaggatccaa 56901
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>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     cacacaacatgattttctgt 29
              ||||||||||||||||||||
Sbjct: 156276 cacacaacatgattttctgt 156257
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>emb|BX276085.8| Zebrafish DNA sequence from clone CH211-194B5 in linkage group 19,
             complete sequence
          Length = 202683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   agttttgccatatcaaacat 402
             ||||||||||||||||||||
Sbjct: 34133 agttttgccatatcaaacat 34152
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>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
              sequence
          Length = 219246

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tcctccttcccaactgtcct 366
              ||||||||||||||||||||
Sbjct: 159296 tcctccttcccaactgtcct 159277
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>dbj|AP001829.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-254C5, complete
             sequence
          Length = 117291

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 28    gtagataattgttttatatcaactatgg 55
             |||| ||||| |||||||||||||||||
Sbjct: 46483 gtaggtaattattttatatcaactatgg 46456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,160,902
Number of Sequences: 3902068
Number of extensions: 4160902
Number of successful extensions: 82671
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82546
Number of HSP's gapped (non-prelim): 121
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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