ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 31 0.63
2BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 28 5.3
3HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) ... 28 5.3
4TRFR_RAT (Q01717) Thyrotropin-releasing hormone receptor (TRH-R)... 28 7.0

>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 341 KNFG-DPCRGVTKSLVVEAACS 279
           +NFG DPCR V K L VEA CS
Sbjct: 814 ENFGGDPCRNVLKKLSVEAICS 835



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 332 GDPCRGVTKSLVVEAAC 282
           GDPC G  K L VEA C
Sbjct: 815 GDPCPGTMKKLAVEAIC 831



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>HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS)|
           (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane
           hydrolyase [cyclizing])
          Length = 262

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 229 IWFRPLLPTNNIYETCHEHAASTTRLFVTPLHGSPKFFADTGTLQLLTPTH 381
           I FR  LP N++ E   E  A+   L  T ++G+  FF+     QL+ P H
Sbjct: 41  ITFRRALP-NDVAEQVREDLAAPGWLVFTSVNGADFFFSYLKENQLILPAH 90



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>TRFR_RAT (Q01717) Thyrotropin-releasing hormone receptor (TRH-R)|
           (Thyroliberin receptor)
          Length = 412

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 122 FTSLHCSNRFWNILFHRTSIAGTIIVSCLFVYKEEESGFAPSFLLTTFMKHVMSMQL 292
           FTS++C   F+ +  + ++    I++SC   YK   + ++P +L+   + +VM M L
Sbjct: 152 FTSIYCMLWFFLLDLNISTYKDAIVISC--GYKISRNYYSPIYLMDFGVFYVMPMIL 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,674,623
Number of Sequences: 219361
Number of extensions: 983578
Number of successful extensions: 2022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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