Clone Name | rbastl54c10 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 4e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 269 aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 328 |||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||| Sbjct: 8167369 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8167428 Query: 329 ctccgaagttctttgctgacaccggcacactgcaa 363 |||| ||||| || | |||||| || ||||||||| Sbjct: 8167429 ctccaaagttattcgatgacactggaacactgcaa 8167463
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 4e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 269 aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 328 |||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||| Sbjct: 8165204 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8165263 Query: 329 ctccgaagttctttgctgacaccggcacactgcaa 363 |||| ||||| || | |||||| || ||||||||| Sbjct: 8165264 ctccaaagttattcgatgacactggaacactgcaa 8165298
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 93.7 bits (47), Expect = 4e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 269 aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 328 |||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||| Sbjct: 98799 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 98858 Query: 329 ctccgaagttctttgctgacaccggcacactgcaa 363 |||| ||||| || | |||||| || ||||||||| Sbjct: 98859 ctccaaagttattcgatgacactggaacactgcaa 98893
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 93.7 bits (47), Expect = 4e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 269 aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 328 |||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||| Sbjct: 2886 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 2827 Query: 329 ctccgaagttctttgctgacaccggcacactgcaa 363 |||| ||||| || | |||||| || ||||||||| Sbjct: 2826 ctccaaagttattcgatgacactggaacactgcaa 2792
>dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B09, full insert sequence Length = 1742 Score = 93.7 bits (47), Expect = 4e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 269 aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 328 |||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||| Sbjct: 1445 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 1386 Query: 329 ctccgaagttctttgctgacaccggcacactgcaa 363 |||| ||||| || | |||||| || ||||||||| Sbjct: 1385 ctccaaagttattcgatgacactggaacactgcaa 1351
>gb|AY106585.1| Zea mays PCO110346 mRNA sequence Length = 1036 Score = 54.0 bits (27), Expect = 3e-04 Identities = 93/115 (80%) Strand = Plus / Minus Query: 271 acatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatct 330 |||||||| |||||||||||||| || |||| ||||||||||| ||| | ||||||| | Sbjct: 792 acatgtcacgagcatgcagcttcaactgcaaggctttttgtgacccctgtacatggattt 733 Query: 331 ccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcct 385 || || | || | ||||| ||||| ||||| |||||||| |||| ||| |||| Sbjct: 732 ccaaaataattcgacgacactggcacgctgcagctgctcactccgatgcaagcct 678
>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence Length = 224641 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 taagtagacaatttactagttt 132 |||||||||||||||||||||| Sbjct: 217131 taagtagacaatttactagttt 217152
>gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60429 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 144 atagattttggaatattttattccat 169 ||||||||||||||||| |||||||| Sbjct: 5118 atagattttggaatattatattccat 5143
>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds Length = 2618 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Minus Query: 276 tcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatc 329 |||||||||||||||||| || |||| || || | ||||||||||||||||| Sbjct: 2457 tcatgagcatgcagcttcaactgcaaggctcttgataactcctctgcatggatc 2404
>gb|AY104777.1| Zea mays PCO062010 mRNA sequence Length = 1069 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 actaacaagtagtacaactcat 108 |||||||||||||||||||||| Sbjct: 952 actaacaagtagtacaactcat 931
>gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, complete sequence Length = 178181 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aatagattttggaatatttta 163 ||||||||||||||||||||| Sbjct: 16846 aatagattttggaatatttta 16866
>ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 protein (LOC417641), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttggaatattttattccatc 170 |||||||||||||||||||| Sbjct: 920 ttggaatattttattccatc 901
>ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (INTS2), mRNA Length = 5076 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttggaatattttattccatc 170 |||||||||||||||||||| Sbjct: 4025 ttggaatattttattccatc 4006
>ref|XM_958751.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial mRNA Length = 3477 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ttttcgtttgacttatctct 43 |||||||||||||||||||| Sbjct: 2639 ttttcgtttgacttatctct 2620
>ref|XM_331949.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial mRNA Length = 3477 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ttttcgtttgacttatctct 43 |||||||||||||||||||| Sbjct: 2639 ttttcgtttgacttatctct 2620
>emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2) Length = 1684 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 acaccggcacactgcaactgctca 370 ||||||||||||| |||||||||| Sbjct: 267 acaccggcacactccaactgctca 244
>emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clone 9c3 Length = 5076 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttggaatattttattccatc 170 |||||||||||||||||||| Sbjct: 4025 ttggaatattttattccatc 4006
>emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11 Length = 999 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttggaatattttattccatc 170 |||||||||||||||||||| Sbjct: 406 ttggaatattttattccatc 387
>gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, complete sequence Length = 179897 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tagattttggaatattttat 164 |||||||||||||||||||| Sbjct: 120677 tagattttggaatattttat 120696
>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete sequence Length = 206093 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 ttattgtttcttgcctgtttgtct 215 |||||||| ||||||||||||||| Sbjct: 133425 ttattgttacttgcctgtttgtct 133448
>gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3p, complete sequence Length = 164528 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 tgctctaatagattttggaa 156 |||||||||||||||||||| Sbjct: 143927 tgctctaatagattttggaa 143946 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,655,940 Number of Sequences: 3902068 Number of extensions: 3655940 Number of successful extensions: 74596 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74526 Number of HSP's gapped (non-prelim): 70 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)