ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-) 32 0.39
2MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 32 0.50
3Y1742_STRPN (Q97P99) UPF0348 protein SP1742 28 5.6
4Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587 28 5.6
5ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 7.3
6ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 7.3
7ITPK1_BOVIN (P0C0T1) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 7.3
8DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial p... 28 7.3
9END3_YEAST (P39013) Protein END3 27 9.5

>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)|
          Length = 915

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 345 EGEKRGVTMEVGGLELPLGKSFTMTWNTHI 256
           E E + V +EV GLE+ +GK F M+W   I
Sbjct: 885 EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 20  NGRMQFHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 145
           N R  F  P  LS         WCSR+T+P++++    S +N
Sbjct: 600 NARNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641



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>Y1742_STRPN (Q97P99) UPF0348 protein SP1742|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 120
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



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>Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 120
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



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>ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 414

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +1

Query: 28  NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 162
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++
Sbjct: 148 NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVF 201



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>ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 419

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +1

Query: 28  NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 162
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++
Sbjct: 148 NGLAFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVF 201



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>ITPK1_BOVIN (P0C0T1) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 419

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +1

Query: 28  NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 162
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++
Sbjct: 148 NGLAFPFICKTRVAHGTNSHEMAIVFNQEGLSAIQPPCVVQNFINHNAVLYKVF 201



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>DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC|
           1.8.1.4) (Dihydrolipoamide dehydrogenase)
          Length = 509

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +1

Query: 160 YKFKLDTTTTSRTKKAHA------DGSRGKCSSILLCFDVRVPCHG 279
           +KFKL+T  T  TKK+        +G+ G  + ++ C DV + C G
Sbjct: 270 FKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITC-DVLLVCIG 314



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>END3_YEAST (P39013) Protein END3|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 88  VFEGNQPPHKLHNRLKHDELLFKLYKFKLDTTTTSR 195
           +F G +P   + N++ HD++L  LY  KLD++  ++
Sbjct: 15  IFSGLKP---IENKVNHDQVLPILYNSKLDSSVLNK 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,163,208
Number of Sequences: 219361
Number of extensions: 660327
Number of successful extensions: 1872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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