ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54c08 |
|---|---|
| Clone Library Name | barley_pub |
>RUVB2_CRYNE (Q5KND8) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 463 Score = 31.6 bits (70), Expect = 0.47 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%) Frame = -1 Query: 340 YTFLGASIGVVVCPDNQLSTDNEVLQS----ESDVLNKQLRYLLI-----TGNLCIEISA 188 Y +GA V CPD +L T EV+ + E DV+N + + L TG + E+ A Sbjct: 213 YDAMGADTRFVACPDGELQTRKEVVHTVSLHEIDVINSRTQGFLALFAGDTGEIKPELRA 272 Query: 187 EL 182 ++ Sbjct: 273 QI 274
>ATCU_ECOLI (Q59385) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 833 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 14 RTTFHK-KHNIHSCF-YNSFVFPMASNTLWYPIG*ILFPVLA 133 R T H K N+ F YNS P+A+ LW G +L PV+A Sbjct: 767 RATLHNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVA 808
>FOXM1_HUMAN (Q08050) Forkhead box protein M1 (Forkhead-related protein FKHL16)| (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix factor from INS-1 cells) (M-phase phosphoprotein 2) (MPM-2 reactive phosp Length = 763 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +1 Query: 232 VVACSGHPTQIAGLRYQLITGCLDKQ---LLQCLHPKMYSRSILQPR 363 +++C G PTQ GLR Q T K+ L+ L PK +R + PR Sbjct: 108 LISCGGAPTQPPGLRPQTQTSYDAKRTEVTLETLGPKPAARDVNLPR 154
>TX496_DENVI (P01405) Toxin 4.9.6| Length = 60 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Frame = -1 Query: 403 VCYP*QVPCQSFRIVAEELICYTFLGASIGVVV-----CPDNQL 287 +CY + P S I EE CY F+ GV++ CP ++ Sbjct: 2 ICYSHKTPQNSATITCEEKTCYKFVTKLPGVILARGCGCPKKEI 45
>KAP1_ARATH (Q43295) Adenylyl-sulfate kinase 1, chloroplast precursor (EC| 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) Length = 276 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 216 LVTYALKFLLNLSFFHPEGLFDS*EFQNART 124 ++ K LL LS P+G+FDS N+R+ Sbjct: 1 MIAAGAKSLLGLSMASPKGIFDSNSMSNSRS 31
>VIRF_YEREN (P13225) Virulence regulon transcriptional activator virF| Length = 271 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 149 ESNRPSGWKKDKFSRNFNA*VTSYQQI 229 E N GWK KF+R F +T+++++ Sbjct: 174 EENYLQGWKLSKFAREFGMGLTTFKEL 200
>LCRF_YERPE (P28808) Thermoregulatory protein lcrF| Length = 271 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 149 ESNRPSGWKKDKFSRNFNA*VTSYQQI 229 E N GWK KF+R F +T+++++ Sbjct: 174 EENYLQGWKLSKFAREFGMGLTTFKEL 200
>ATCU_SALTY (Q8ZR95) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 832 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +2 Query: 17 TTFHKKHNIHSCF-YNSFVFPMASNTLWYPIG*ILFPVLA 133 T + K N+ F YNS P+A+ LW G +L PV+A Sbjct: 768 TLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVA 807
>ATCU_SALTI (Q8Z8S4) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 832 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +2 Query: 17 TTFHKKHNIHSCF-YNSFVFPMASNTLWYPIG*ILFPVLA 133 T + K N+ F YNS P+A+ LW G +L PV+A Sbjct: 768 TLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVA 807
>ATCU_ECO57 (Q8XD24) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 833 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +2 Query: 17 TTFHKKHNIHSCF-YNSFVFPMASNTLWYPIG*ILFPVLA 133 T + K N+ F YNS P+A+ LW G +L PV+A Sbjct: 769 TLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVA 808
>CAPA_STAAW (Q9RQQ1) Capsular polysaccharide biosynthesis protein capA| Length = 220 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 253 DVLNKQLRYLLITGNLCIEISAELIFF 173 ++L K ++ LLI +C+ +SA L FF Sbjct: 12 NILKKNIKLLLILPAICLVVSAALTFF 38
>CAPA_STAAS (Q6G610) Capsular polysaccharide biosynthesis protein capA| Length = 220 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 253 DVLNKQLRYLLITGNLCIEISAELIFF 173 ++L K ++ LLI +C+ +SA L FF Sbjct: 12 NILKKNIKLLLILPAICLVVSAALTFF 38
>CAPA_STAAR (Q6GDE0) Capsular polysaccharide biosynthesis protein capA| Length = 220 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 253 DVLNKQLRYLLITGNLCIEISAELIFF 173 ++L K ++ LLI +C+ +SA L FF Sbjct: 12 NILKKNIKLLLILPAICLVVSAALTFF 38
>CAPA_STAAC (Q5HCN3) Capsular polysaccharide biosynthesis protein capA| Length = 220 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 253 DVLNKQLRYLLITGNLCIEISAELIFF 173 ++L K ++ LLI +C+ +SA L FF Sbjct: 12 NILKKNIKLLLILPAICLVVSAALTFF 38 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,109,776 Number of Sequences: 219361 Number of extensions: 1138901 Number of successful extensions: 2422 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2422 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
