Clone Name | rbastl54c08 |
---|---|
Clone Library Name | barley_pub |
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 gtttttacaattcctttgttttt 73 ||||||||||||||||||||||| Sbjct: 2584132 gtttttacaattcctttgttttt 2584154
>gb|AY963808.1| Triticum aestivum putative S-locus receptor kinase gene, partial cds; and mitochondrial Mn-superoxide dismutase (MnSOD) gene, complete cds, nuclear gene encoding mitochondrial protein Length = 11304 Score = 44.1 bits (22), Expect = 0.35 Identities = 31/34 (91%) Strand = Plus / Minus Query: 15 gtactacatttcataagaaacataacatccactc 48 ||||||||||||||| |||| |||||||||||| Sbjct: 5955 gtactacatttcataggaaatctaacatccactc 5922
>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence Length = 159930 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 51331 caaacaactactccaatgctt 51311
>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence Length = 181148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 6010 caaacaactactccaatgctt 6030
>gb|AC004648.1| Homo sapiens chromosome 5, PAC clone 17e19 (LBNL H148), complete sequence Length = 140101 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tttgaaattcctaagaatcaa 155 ||||||||||||||||||||| Sbjct: 129022 tttgaaattcctaagaatcaa 129042
>ref|XM_540397.2| PREDICTED: Canis familiaris similar to round spermatid basic protein 1-like (LOC483278), mRNA Length = 2460 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 ccaaaaatgtatagcagatcaattc 352 |||||||||||||||| |||||||| Sbjct: 256 ccaaaaatgtatagcaaatcaattc 280
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tttttcctgttcttgcatttt 137 ||||||||||||||||||||| Sbjct: 57511 tttttcctgttcttgcatttt 57491
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tttttcctgttcttgcatttt 137 ||||||||||||||||||||| Sbjct: 61253 tttttcctgttcttgcatttt 61273
>ref|NM_167301.1| Drosophila melanogaster CG2446-RE, transcript variant E (CG2446), mRNA Length = 2944 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 303 caaacaactactccaatgctt 283
>ref|NM_167300.1| Drosophila melanogaster CG2446-RD, transcript variant D (CG2446), mRNA Length = 3016 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 432 caaacaactactccaatgctt 412
>ref|NM_167299.1| Drosophila melanogaster CG2446-RB, transcript variant B (CG2446), mRNA Length = 2953 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 432 caaacaactactccaatgctt 412
>ref|NM_132513.4| Drosophila melanogaster CG2446-RC, transcript variant C (CG2446), mRNA Length = 2973 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 303 caaacaactactccaatgctt 283
>gb|AC010273.8| Homo sapiens chromosome 5 clone CTC-498J12, complete sequence Length = 144768 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ctataggatgaattctttttc 122 ||||||||||||||||||||| Sbjct: 142717 ctataggatgaattctttttc 142737
>gb|AC158204.2| Physcomitrella patens clone JGIASYB-1A5, complete sequence Length = 34504 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ttttacaattcctttgttttt 73 ||||||||||||||||||||| Sbjct: 32736 ttttacaattcctttgttttt 32716
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tttttcctgttcttgcatttt 137 ||||||||||||||||||||| Sbjct: 31483570 tttttcctgttcttgcatttt 31483590
>gb|AC159397.2| Physcomitrella patens clone JGIASYB-5E23, complete sequence Length = 41296 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ttttacaattcctttgttttt 73 ||||||||||||||||||||| Sbjct: 14293 ttttacaattcctttgttttt 14313
>gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complete sequence Length = 137457 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 113 attctttttcctgttcttgcattttgaaa 141 |||||||||||||||||| |||| ||||| Sbjct: 571 attctttttcctgttcttacattgtgaaa 599
>gb|AC118276.3| Homo sapiens BAC clone RP11-115F20 from 2, complete sequence Length = 51729 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 113 attctttttcctgttcttgcattttgaaa 141 |||||||||||||||||| |||| ||||| Sbjct: 50300 attctttttcctgttcttacattgtgaaa 50328
>gb|AC093248.3| Homo sapiens chromosome 5 clone RP11-141O11, complete sequence Length = 148585 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ctataggatgaattctttttc 122 ||||||||||||||||||||| Sbjct: 145460 ctataggatgaattctttttc 145440
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tttttcctgttcttgcatttt 137 ||||||||||||||||||||| Sbjct: 101886 tttttcctgttcttgcatttt 101906
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete sequence Length = 308317 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 9548 caaacaactactccaatgctt 9568
>gb|BT001379.1| Drosophila melanogaster GH02702 full insert cDNA Length = 3070 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 caaacaactactccaatgctt 323 ||||||||||||||||||||| Sbjct: 408 caaacaactactccaatgctt 388
>gb|AC102098.8| Mus musculus chromosome 7, clone RP23-49M22, complete sequence Length = 192099 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 ctggcaagggacttgctaagggta 397 ||||||||| |||||||||||||| Sbjct: 63766 ctggcaaggtacttgctaagggta 63789
>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research Institute) complete sequence Length = 247588 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cattttgaaattcctaagaa 151 |||||||||||||||||||| Sbjct: 69731 cattttgaaattcctaagaa 69712
>gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, complete sequence Length = 183782 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 aaaaatgtatagcagatcaa 349 |||||||||||||||||||| Sbjct: 9399 aaaaatgtatagcagatcaa 9418
>gb|AC148310.2| Pan troglodytes BAC clone RP43-31J11 from 7, complete sequence Length = 203635 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 tttttacaattcctttgtttttccaatg 79 ||||| ||||||||||| |||||||||| Sbjct: 91725 ttttttcaattcctttgcttttccaatg 91752
>gb|AC139943.3| Mus musculus BAC clone RP23-472M3 from chromosome 7, complete sequence Length = 183421 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ttgcattttgaaattcctaagaat 152 |||||||||||||| ||||||||| Sbjct: 136757 ttgcattttgaaatacctaagaat 136734
>emb|AL136456.13| Human DNA sequence from clone RP11-97K3 on chromosome 1q31.1-31.3, complete sequence Length = 158745 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 agaaacataacatccactcatgtt 53 ||||||| |||||||||||||||| Sbjct: 34479 agaaacaaaacatccactcatgtt 34502
>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence Length = 203937 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aaattcctaagaatcaaata 158 |||||||||||||||||||| Sbjct: 117818 aaattcctaagaatcaaata 117799
>gb|AC114482.2| Homo sapiens chromosome 1 clone RP11-484D4, complete sequence Length = 161874 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaaaatgtatagcagatcaa 349 |||||||||||||||||||| Sbjct: 100979 aaaaatgtatagcagatcaa 100960
>dbj|AK126511.1| Homo sapiens cDNA FLJ44547 fis, clone UTERU3006228 Length = 3910 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgttcttgcattttgaaat 142 |||||||||||||||||||| Sbjct: 2531 ctgttcttgcattttgaaat 2550
>gb|AC009265.10| Homo sapiens, clone RP11-45B18, complete sequence Length = 179844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaaaatgtatagcagatcaa 349 |||||||||||||||||||| Sbjct: 166774 aaaaatgtatagcagatcaa 166755
>gb|AC008900.5| Homo sapiens chromosome 5 clone CTD-2242C17, complete sequence Length = 166253 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tacaattcctttgtttttcc 75 |||||||||||||||||||| Sbjct: 48710 tacaattcctttgtttttcc 48729
>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence Length = 114802 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tacaattcctttgtttttcc 75 |||||||||||||||||||| Sbjct: 3714 tacaattcctttgtttttcc 3695
>gb|AC146679.4| Felis catus clone RP86-252D24, complete sequence Length = 136388 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tttttcctgttcttgcattt 136 |||||||||||||||||||| Sbjct: 21362 tttttcctgttcttgcattt 21343
>gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, complete sequence Length = 168084 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cttgcacccaaaaatgtatagcag 344 ||||||||||||| |||||||||| Sbjct: 124013 cttgcacccaaaagtgtatagcag 123990
>emb|BX072583.7| Zebrafish DNA sequence from clone CH211-185M2 in linkage group 13, complete sequence Length = 154297 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tcatgtttttacaattcctt 66 |||||||||||||||||||| Sbjct: 57281 tcatgtttttacaattcctt 57300
>gb|BT021862.1| Bos taurus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 (B3GNT5), mRNA, complete cds Length = 2177 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tacatttcataagaaacata 38 |||||||||||||||||||| Sbjct: 1178 tacatttcataagaaacata 1159
>emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4, complete sequence Length = 210697 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gggtaacatacatctgcaac 412 |||||||||||||||||||| Sbjct: 33232 gggtaacatacatctgcaac 33213
>emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 in linkage group 19, complete sequence Length = 150160 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tccactcatgtttttacaat 61 |||||||||||||||||||| Sbjct: 143216 tccactcatgtttttacaat 143197
>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4, complete sequence Length = 200352 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gggtaacatacatctgcaac 412 |||||||||||||||||||| Sbjct: 72627 gggtaacatacatctgcaac 72608
>gb|AF020503.1|AF020503 Homo sapiens FRA3B common fragile region, diadenosine triphosphate hydrolase (FHIT) gene, exon 5 Length = 206880 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ttcctgttcttgcattttga 139 |||||||||||||||||||| Sbjct: 164879 ttcctgttcttgcattttga 164860
>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 cattttgaaattcctaagaa 151 |||||||||||||||||||| Sbjct: 77526 cattttgaaattcctaagaa 77545
>dbj|AP000348.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone N27C7 Length = 39617 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgttcttgcattttgaaat 142 |||||||||||||||||||| Sbjct: 8930 ctgttcttgcattttgaaat 8911 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,679,807 Number of Sequences: 3902068 Number of extensions: 4679807 Number of successful extensions: 85827 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85698 Number of HSP's gapped (non-prelim): 129 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)