>NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog precursor (XOTCH|
            protein)
          Length = 2524

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +2

Query: 164  TDTTKYHYTRSSDPITKFHCHRPPGCMTSINVHDTVVFWAQTVCLGGTSQRSFASTLTTA 343
            T+++ ++     D I  F C  PPG   S   HD     ++    GGT Q S+ +   T 
Sbjct: 987  TESSCFNGGTCIDGINTFTCQCPPGFTGSYCQHDINECDSKPCLNGGTCQDSYGTYKCTC 1046

Query: 344  TSKYTII*CDKTSAEASHSP 403
               YT + C         SP
Sbjct: 1047 PQGYTGLNCQNLVRWCDSSP 1066

>Y2191_MYCTU (Q10384) Hypothetical protein Rv2191/MT2247|
          Length = 645

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -1

Query: 403 RGVRSFR-RSFVALYNGILASCSCQCRSKRTLTRAAKANGLCPEDHSIMDIDACHATRWA 227
           R V  FR RS  A    +LA C+        LTR+A+    CPE    +++ AC A R  
Sbjct: 357 RVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPE----LEVSACPAARDV 412

Query: 226 MAMEFGDWIRAPCVVI 179
            A ++ + +     +I
Sbjct: 413 TAAQYAEAVLRAAALI 428

>GAOX2_ARATH (Q39111) Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 2) (GA 20-oxidase 2)
          Length = 378

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
 Frame = -1

Query: 379 SFVALYNGILASCSCQCRSKRTLTRAAKANGLCPEDHSIM----DIDACHATR------W 230
           +F+AL NGI  SC  +    R   R + A  LCP+   ++    DI     TR      W
Sbjct: 287 TFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTW 346

Query: 229 AMAMEF 212
           +M +EF
Sbjct: 347 SMFLEF 352

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 164  TDTTKYHYTRSSDPITKFHCHRPPGCMTSINVHDTVVFWAQTVCLGGTSQRSFASTLTTA 343
            T+++ ++     D I  F C  PPG   S   +D     ++    GGT Q S+ +   T 
Sbjct: 988  TESSCFNGGTCVDGINSFTCLCPPGFTGSYCQYDVNECDSRPCLHGGTCQDSYGTYKCTC 1047

Query: 344  TSKYTII*C 370
               YT + C
Sbjct: 1048 PQGYTGLNC 1056

>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular
            truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 164  TDTTKYHYTRSSDPITKFHCHRPPGCMTSINVHDTVVFWAQTVCLGGTSQRSFASTLTTA 343
            T+++ ++     D I  F C  PPG   S   +D     ++    GGT Q S+ +   T 
Sbjct: 988  TESSCFNGGTCVDGINSFTCLCPPGFTGSYCQYDVNECDSRPCLHGGTCQDSYGTYKCTC 1047

Query: 344  TSKYTII*C 370
               YT + C
Sbjct: 1048 PQGYTGLNC 1056

>UXAC_BACSK (Q5WJC1) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)|
           (Uronic isomerase)
          Length = 472

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 164 TDTTKYHYTRSSDPITKFHCHRPP 235
           T  T YH    + PI  +HCH PP
Sbjct: 19  TAETLYHTYAKTLPIIDYHCHVPP 42

>RL31_TREDE (Q73MK4) 50S ribosomal protein L31|
          Length = 67

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 14 TRSISRDVQVMTVSSCHKLFTG 79
          TRS  +D++V   S CH  FTG
Sbjct: 24 TRSTVKDIKVEICSQCHPFFTG 45

>POLG_HPAVS (P14553) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2230

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V + T  D
Sbjct: 457 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTSQTGDD 499

>POLG_HPAVT (P31788) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A)] (Fragment)
          Length = 839

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V + T  D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTSQTGDD 495

>POLG_HAVGA (Q02381) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A)] (Fragment)
          Length = 808

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 432 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 474

>POLG_HAV43 (P26581) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2226

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POLG_HAV24 (P26580) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2226

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POLG_HAV18 (P26582) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2226

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 399

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 331 CRSKRTLTRAAKANGLCPEDHSIMDID 251
           CR      RAAK+ GL  E+++IM +D
Sbjct: 118 CRDYLKAARAAKSAGLAKENYTIMHLD 144

>POLG_HAVMB (P13901) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2227

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POLG_HAVLA (P06441) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2227

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POLG_HAVHM (P08617) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Probable
           protein P3A; Pr
          Length = 2227

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495

>POLG_HAVCR (P06442) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A)] (Fragment)
          Length = 852

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 162 NQCTHPSNFARHSLICNLNSFVIIECFQPVKSLWHDDTVITCTSRD 25
           N+ T PSN A H  +    S + +ECF P   L+H   V T    D
Sbjct: 453 NRLTSPSNVASHVRVNVYLSAINLECFAP---LYHAMDVTTQVGDD 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,059,922
Number of Sequences: 219361
Number of extensions: 1117788
Number of successful extensions: 2367
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)