ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence 143 4e-31
2gb|AY105873.1| Zea mays PCO094136 mRNA sequence 143 4e-31
3ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 66 8e-08
4dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
5gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosom... 42 1.2
6gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... 42 1.2
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
8dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
9dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome... 42 1.2
11ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-co... 40 4.7
12gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, com... 40 4.7
13gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... 40 4.7
14gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.7
15emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chr... 40 4.7 
>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score =  143 bits (72), Expect = 4e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                        
Query: 239  gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacgact 298
            |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | |
Sbjct: 1327 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcaccagt 1268

                                                                    
Query: 299  gtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctg 354
            | ||| |||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1267 gcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctg 1212
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>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score =  143 bits (72), Expect = 4e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                       
Query: 239 gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacgact 298
           |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | |
Sbjct: 513 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcaccagt 454

                                                                   
Query: 299 gtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctg 354
           | ||| |||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 453 gcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctg 398
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>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                        
Query: 230  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 289
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465

                                                                 
Query: 290  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctgg 342
            || || | || ||  || |||||||| ||||||||||| || || ||||||||
Sbjct: 3464 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctgg 3412
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>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                        
Query: 230  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 289
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124

                                                                 
Query: 290  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctgg 342
            || || | || ||  || |||||||| ||||||||||| || || ||||||||
Sbjct: 1123 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctgg 1071
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>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence
          Length = 187416

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    taacaacagaaactccaacaa 320
              |||||||||||||||||||||
Sbjct: 153736 taacaacagaaactccaacaa 153756
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>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 29     aaatattagtcaacaatggtacaaa 53
              |||||||||||||||||| ||||||
Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 230      gaacttagggaagtcattcctacagcgctctggtacaagtc 270
                |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                            
Query: 275      aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 334
                ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168

                        
Query: 335      ggggctgg 342
                ||||||||
Sbjct: 11024169 ggggctgg 11024176
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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 230   gaacttagggaagtcattcctacagcgctctggtacaagtc 270
             |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                         
Query: 275   aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 334
             ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050

                     
Query: 335   ggggctgg 342
             ||||||||
Sbjct: 53051 ggggctgg 53058
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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 230    gaacttagggaagtcattcctacagcgctctggtacaagtc 270
              |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                          
Query: 275    aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 334
              ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010

                      
Query: 335    ggggctgg 342
              ||||||||
Sbjct: 127011 ggggctgg 127018
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>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 300    taacaacagaaactccaacaa 320
              |||||||||||||||||||||
Sbjct: 170731 taacaacagaaactccaacaa 170711
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>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein
            (DDB0220518), partial mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 296  actgtaacaacagaaactccaaca 319
            ||||||||||||| ||||||||||
Sbjct: 8839 actgtaacaacagtaactccaaca 8862
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>gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, complete sequence
          Length = 204508

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gctctttttctcaatattgt 195
             ||||||||||||||||||||
Sbjct: 31372 gctctttttctcaatattgt 31353
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>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     tacaaaatattagtcaacaa 44
              ||||||||||||||||||||
Sbjct: 131842 tacaaaatattagtcaacaa 131823
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      acaaaatattagtcaacaat 45
               ||||||||||||||||||||
Sbjct: 2555987 acaaaatattagtcaacaat 2555968
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>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete
             sequence
          Length = 172826

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aaatattagtcaacaatggt 48
             ||||||||||||||||||||
Sbjct: 59691 aaatattagtcaacaatggt 59710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,456,215
Number of Sequences: 3902068
Number of extensions: 3456215
Number of successful extensions: 62829
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62769
Number of HSP's gapped (non-prelim): 58
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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