ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL121674.12|HSDJ540H1 Human DNA sequence from clone RP4-540H... 42 1.2
2gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com... 40 4.7
3gb|AC155296.2| Mus musculus BAC clone RP24-303N23 from chromosom... 40 4.7

>emb|AL121674.12|HSDJ540H1 Human DNA sequence from clone RP4-540H1 on chromosome 20 Contains
           part of the CHD6 gene for chromodomain helicase DNA
           binding protein 6, complete sequence
          Length = 39079

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 accactaccactgatcttgca 225
           |||||||||||||||||||||
Sbjct: 964 accactaccactgatcttgca 984



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>gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, complete sequence
          Length = 207293

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    tagcaaaccactaccactga 218
              ||||||||||||||||||||
Sbjct: 196835 tagcaaaccactaccactga 196854



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>gb|AC155296.2| Mus musculus BAC clone RP24-303N23 from chromosome 12, complete sequence
          Length = 167744

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    tagcaaaccactaccactga 218
              ||||||||||||||||||||
Sbjct: 162191 tagcaaaccactaccactga 162172


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,421,197
Number of Sequences: 3902068
Number of extensions: 2421197
Number of successful extensions: 33338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33335
Number of HSP's gapped (non-prelim): 3
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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