ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464004.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK102856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5gb|AC167468.2| Mus musculus BAC clone RP23-163J2 from chromosome... 42 1.5
6gb|AC162918.3| Mus musculus BAC clone RP23-370K14 from chromosom... 42 1.5
7ref|XM_638550.1| Dictyostelium discoideum hypothetical protein (... 40 6.0
8gb|AC162799.4| Mus musculus BAC clone RP24-392E13 from chromosom... 40 6.0
9ref|XM_458843.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.0
10gb|AC114258.3| Dictyostelium discoideum chromosome 2 map complem... 40 6.0
11emb|AL627260.7| Human DNA sequence from clone RP11-153E4 on chro... 40 6.0
12emb|AL353113.7| Human DNA sequence from clone RP11-304I5 on chro... 40 6.0
13emb|AL137074.17| Human DNA sequence from clone RP11-476B13 on ch... 40 6.0
14emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 6.0
15gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, com... 40 6.0
16gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, co... 40 6.0
17gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, co... 40 6.0
18gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, c... 40 6.0
19gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305... 40 6.0
20emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in ... 40 6.0
21gb|AC007435.12|AC007435 Homo sapiens, clone 6_C_10, complete seq... 40 6.0 
>ref|XM_464004.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2166

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 372  tcatctacaactcttcagcccgatatttggatgacc 407
            |||| |||||||||||||||| ||||||||||||||
Sbjct: 1679 tcatgtacaactcttcagccctatatttggatgacc 1644
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 372     tcatctacaactcttcagcccgatatttggatgacc 407
               |||| |||||||||||||||| ||||||||||||||
Sbjct: 1606724 tcatgtacaactcttcagccctatatttggatgacc 1606689



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 372     tcatctacaactcttcagcccgatatttggatga 405
               |||| |||||||||||||||| | ||||||||||
Sbjct: 1668015 tcatgtacaactcttcagccctacatttggatga 1668048
to top
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 372   tcatctacaactcttcagcccgatatttggatgacc 407
             |||| |||||||||||||||| ||||||||||||||
Sbjct: 43827 tcatgtacaactcttcagccctatatttggatgacc 43792



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 372    tcatctacaactcttcagcccgatatttggatga 405
              |||| |||||||||||||||| | ||||||||||
Sbjct: 105118 tcatgtacaactcttcagccctacatttggatga 105151
to top
>dbj|AK102856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110M10, full
            insert sequence
          Length = 2166

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 372  tcatctacaactcttcagcccgatatttggatgacc 407
            |||| |||||||||||||||| ||||||||||||||
Sbjct: 1679 tcatgtacaactcttcagccctatatttggatgacc 1644
to top
>gb|AC167468.2| Mus musculus BAC clone RP23-163J2 from chromosome 10, complete sequence
          Length = 219954

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   ttggtatgaatgattttgggg 281
             |||||||||||||||||||||
Sbjct: 51119 ttggtatgaatgattttgggg 51099
to top
>gb|AC162918.3| Mus musculus BAC clone RP23-370K14 from chromosome 10, complete
             sequence
          Length = 165624

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   ttggtatgaatgattttgggg 281
             |||||||||||||||||||||
Sbjct: 90328 ttggtatgaatgattttgggg 90348
to top
>ref|XM_638550.1| Dictyostelium discoideum hypothetical protein (DDB0231494), partial
           mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   catttcaaacattaaaatct 28
           ||||||||||||||||||||
Sbjct: 303 catttcaaacattaaaatct 322
to top
>gb|AC162799.4| Mus musculus BAC clone RP24-392E13 from chromosome 3, complete sequence
          Length = 177586

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 286   caccaggcatgcatgatacaatca 309
             ||||||||||| ||||||||||||
Sbjct: 61535 caccaggcatgaatgatacaatca 61558
to top
>ref|XM_458843.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D09658g)
            partial mRNA
          Length = 1836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   tatgagctacaacaaggagc 101
            ||||||||||||||||||||
Sbjct: 1835 tatgagctacaacaaggagc 1816
to top
>gb|AC114258.3| Dictyostelium discoideum chromosome 2 map complement(427476-387492)
             strain AX4, complete sequence
          Length = 39984

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     catttcaaacattaaaatct 28
             ||||||||||||||||||||
Sbjct: 29125 catttcaaacattaaaatct 29144
to top
>emb|AL627260.7| Human DNA sequence from clone RP11-153E4 on chromosome 9, complete
             sequence
          Length = 110815

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   atgaacaaactactccaagc 353
             ||||||||||||||||||||
Sbjct: 25759 atgaacaaactactccaagc 25778
to top
>emb|AL353113.7| Human DNA sequence from clone RP11-304I5 on chromosome 10 Contains the
             gene for a novel lipase and gene MGC22805, complete
             sequence
          Length = 43456

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    ttatgagctacaacaaggag 100
             ||||||||||||||||||||
Sbjct: 22580 ttatgagctacaacaaggag 22599
to top
>emb|AL137074.17| Human DNA sequence from clone RP11-476B13 on chromosome 9 Contains the
             5' end of the C9orf12 gene for chromosome 9 open reading
             frame 12,  a ribosomal protein L21 (RPL21) pseudogene, the
             3' end of the gene for coiled-coil protein (BICD2)
             (KIAA0699) and three CpG islands, complete sequence
          Length = 83039

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   cagccttgttcatgacagca 171
             ||||||||||||||||||||
Sbjct: 39833 cagccttgttcatgacagca 39852
to top
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tatgagctacaacaaggagc 101
              ||||||||||||||||||||
Sbjct: 694903 tatgagctacaacaaggagc 694884
to top
>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence
          Length = 198470

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   cagccttgttcatgacagca 171
             ||||||||||||||||||||
Sbjct: 75930 cagccttgttcatgacagca 75911
to top
>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence
          Length = 226696

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  cagccttgttcatgacagca 171
            ||||||||||||||||||||
Sbjct: 4921 cagccttgttcatgacagca 4940
to top
>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence
          Length = 200420

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   cagccttgttcatgacagca 171
             ||||||||||||||||||||
Sbjct: 25915 cagccttgttcatgacagca 25896
to top
>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence
          Length = 158617

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    cagccttgttcatgacagca 171
              ||||||||||||||||||||
Sbjct: 137116 cagccttgttcatgacagca 137097
to top
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence
          Length = 166978

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   cagccttgttcatgacagca 171
             ||||||||||||||||||||
Sbjct: 74911 cagccttgttcatgacagca 74892
to top
>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
              complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tccaccaggcatgcatgata 303
              ||||||||||||||||||||
Sbjct: 126166 tccaccaggcatgcatgata 126185
to top
>gb|AC007435.12|AC007435 Homo sapiens, clone 6_C_10, complete sequence
          Length = 178342

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    aacaaactactccaagcatt 356
              ||||||||||||||||||||
Sbjct: 142182 aacaaactactccaagcatt 142201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,519,694
Number of Sequences: 3902068
Number of extensions: 3519694
Number of successful extensions: 62396
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62340
Number of HSP's gapped (non-prelim): 56
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top