ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCP1_BRARE (Q7ZWG6) Heme carrier protein 1 30 1.8
2FRHA_METVO (Q00390) Coenzyme F420 hydrogenase alpha subunit (EC ... 28 6.8

>HCP1_BRARE (Q7ZWG6) Heme carrier protein 1|
          Length = 481

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -3

Query: 184 VITVYLGCGEIFLLS*VSSPRCY 116
           V+TV+LGC ++++L  +S+P C+
Sbjct: 297 VVTVHLGCSDLYVLYELSAPLCW 319



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>FRHA_METVO (Q00390) Coenzyme F420 hydrogenase alpha subunit (EC 1.12.98.1)|
           (8-hydroxy-5-deazaflavin-reducing hydrogenase alpha
           subunit) (FRH)
          Length = 398

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 187 THVTEMSQLHDDHYLLGLSSYLQRQNAEYMAAISFAPTDILQSSFMSKSSVKACIL 354
           T + E    HD  YL   S+Y  R+N E      + P D+    +  + +V+AC L
Sbjct: 202 TEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDV----YEKEVAVQACQL 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,188,837
Number of Sequences: 219361
Number of extensions: 1182078
Number of successful extensions: 1924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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