Clone Name | rbastl54c01 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 248 atcttcaacggcaaaacgcggaa 270 ||||||||||||||||||||||| Sbjct: 4679031 atcttcaacggcaaaacgcggaa 4679053
>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete sequence Length = 102448 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 tgataacatacacatgttacag 199 |||||||||||||||||||||| Sbjct: 71022 tgataacatacacatgttacag 71043
>gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, complete sequence Length = 189965 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgggtgaactcactcagga 142 |||||||||||||||||||| Sbjct: 17435 ctgggtgaactcactcagga 17416
>gb|AY522332.4| Agrotis segetum granulovirus, complete genome Length = 131680 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tcatctttcatgtcaaaatc 332 |||||||||||||||||||| Sbjct: 117465 tcatctttcatgtcaaaatc 117446
>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence Length = 175179 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgggtgaactcactcagga 142 |||||||||||||||||||| Sbjct: 57571 ctgggtgaactcactcagga 57552
>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence Length = 174973 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 tctgggtgaactcactcaggacaa 145 ||||||| |||||||||||||||| Sbjct: 42400 tctgggttaactcactcaggacaa 42377
>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence Length = 215326 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cccaagataaactgtgataa 183 |||||||||||||||||||| Sbjct: 82295 cccaagataaactgtgataa 82276
>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence Length = 246237 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaaaaatatttcaccaca 163 |||||||||||||||||||| Sbjct: 104631 aacaaaaatatttcaccaca 104612
>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence Length = 250880 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tcttcaatcatctttcatgt 325 |||||||||||||||||||| Sbjct: 164357 tcttcaatcatctttcatgt 164376
>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3, complete sequence Length = 122049 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agacatacatataacatctg 125 |||||||||||||||||||| Sbjct: 55279 agacatacatataacatctg 55298
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 atctttcatgtcaaaatcat 334 |||||||||||||||||||| Sbjct: 2036 atctttcatgtcaaaatcat 2055
>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1 Length = 206420 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 atctttcatgtcaaaatcat 334 |||||||||||||||||||| Sbjct: 200292 atctttcatgtcaaaatcat 200311
>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86 Length = 198780 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 atctttcatgtcaaaatcat 334 |||||||||||||||||||| Sbjct: 54942 atctttcatgtcaaaatcat 54923
>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence Length = 211305 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cccaagataaactgtgataa 183 |||||||||||||||||||| Sbjct: 160071 cccaagataaactgtgataa 160052
>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence Length = 171812 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cccaagataaactgtgataa 183 |||||||||||||||||||| Sbjct: 59086 cccaagataaactgtgataa 59067
>gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, complete sequence Length = 181941 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tgaaggcatgcattcttgacagga 361 ||||||||||| |||||||||||| Sbjct: 69822 tgaaggcatgctttcttgacagga 69799
>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence Length = 167135 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cccaagataaactgtgataa 183 |||||||||||||||||||| Sbjct: 158166 cccaagataaactgtgataa 158147
>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete sequence Length = 161533 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 tctgggtgaactcactcaggacaa 145 ||||||| |||||||||||||||| Sbjct: 80282 tctgggttaactcactcaggacaa 80305
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 acaacaaaaatatttcacca 161 |||||||||||||||||||| Sbjct: 73257 acaacaaaaatatttcacca 73276
>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete sequence Length = 217241 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tgaaggcatgcattcttgacagga 361 ||||||||||| |||||||||||| Sbjct: 193023 tgaaggcatgctttcttgacagga 193046
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 atatttcaccacacccaaga 170 |||||||||||||||||||| Sbjct: 167469 atatttcaccacacccaaga 167488
>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete sequence Length = 219634 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 acattcttcaatcatctttcatgt 325 |||||||||||| ||||||||||| Sbjct: 29643 acattcttcaattatctttcatgt 29620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,315,093 Number of Sequences: 3902068 Number of extensions: 4315093 Number of successful extensions: 82083 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82021 Number of HSP's gapped (non-prelim): 62 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)