ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000316.1| Polaromonas sp. JS666, complete genome 46 0.089
2emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chr... 44 0.35
3gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, co... 40 5.5
4gb|AY522332.4| Agrotis segetum granulovirus, complete genome 40 5.5
5gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, com... 40 5.5
6gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome... 40 5.5
7gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, comp... 40 5.5
8emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, compl... 40 5.5
9gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, co... 40 5.5
10emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C... 40 5.5
11emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.5
12emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.5
13emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, ... 40 5.5
14gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complet... 40 5.5
15gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 5.5
16gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, compl... 40 5.5
17gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 40 5.5
18emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chr... 40 5.5
19emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in l... 40 5.5
20emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 40 5.5
21emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 5.5
22emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chr... 40 5.5

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 248     atcttcaacggcaaaacgcggaa 270
               |||||||||||||||||||||||
Sbjct: 4679031 atcttcaacggcaaaacgcggaa 4679053



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>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete
             sequence
          Length = 102448

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 178   tgataacatacacatgttacag 199
             ||||||||||||||||||||||
Sbjct: 71022 tgataacatacacatgttacag 71043



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>gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, complete sequence
          Length = 189965

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ctgggtgaactcactcagga 142
             ||||||||||||||||||||
Sbjct: 17435 ctgggtgaactcactcagga 17416



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>gb|AY522332.4| Agrotis segetum granulovirus, complete genome
          Length = 131680

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    tcatctttcatgtcaaaatc 332
              ||||||||||||||||||||
Sbjct: 117465 tcatctttcatgtcaaaatc 117446



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>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ctgggtgaactcactcagga 142
             ||||||||||||||||||||
Sbjct: 57571 ctgggtgaactcactcagga 57552



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>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence
          Length = 174973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   tctgggtgaactcactcaggacaa 145
             ||||||| ||||||||||||||||
Sbjct: 42400 tctgggttaactcactcaggacaa 42377



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>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence
          Length = 215326

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   cccaagataaactgtgataa 183
             ||||||||||||||||||||
Sbjct: 82295 cccaagataaactgtgataa 82276



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>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence
          Length = 246237

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aacaaaaatatttcaccaca 163
              ||||||||||||||||||||
Sbjct: 104631 aacaaaaatatttcaccaca 104612



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>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence
          Length = 250880

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    tcttcaatcatctttcatgt 325
              ||||||||||||||||||||
Sbjct: 164357 tcttcaatcatctttcatgt 164376



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>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 122049

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agacatacatataacatctg 125
             ||||||||||||||||||||
Sbjct: 55279 agacatacatataacatctg 55298



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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No.
            2
          Length = 198354

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 315  atctttcatgtcaaaatcat 334
            ||||||||||||||||||||
Sbjct: 2036 atctttcatgtcaaaatcat 2055



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>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    atctttcatgtcaaaatcat 334
              ||||||||||||||||||||
Sbjct: 200292 atctttcatgtcaaaatcat 200311



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>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   atctttcatgtcaaaatcat 334
             ||||||||||||||||||||
Sbjct: 54942 atctttcatgtcaaaatcat 54923



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>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence
          Length = 211305

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    cccaagataaactgtgataa 183
              ||||||||||||||||||||
Sbjct: 160071 cccaagataaactgtgataa 160052



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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   cccaagataaactgtgataa 183
             ||||||||||||||||||||
Sbjct: 59086 cccaagataaactgtgataa 59067



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>gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, complete sequence
          Length = 181941

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   tgaaggcatgcattcttgacagga 361
             ||||||||||| ||||||||||||
Sbjct: 69822 tgaaggcatgctttcttgacagga 69799



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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    cccaagataaactgtgataa 183
              ||||||||||||||||||||
Sbjct: 158166 cccaagataaactgtgataa 158147



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>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete
             sequence
          Length = 161533

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tctgggtgaactcactcaggacaa 145
             ||||||| ||||||||||||||||
Sbjct: 80282 tctgggttaactcactcaggacaa 80305



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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   acaacaaaaatatttcacca 161
             ||||||||||||||||||||
Sbjct: 73257 acaacaaaaatatttcacca 73276



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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
              sequence
          Length = 217241

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    tgaaggcatgcattcttgacagga 361
              ||||||||||| ||||||||||||
Sbjct: 193023 tgaaggcatgctttcttgacagga 193046



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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    atatttcaccacacccaaga 170
              ||||||||||||||||||||
Sbjct: 167469 atatttcaccacacccaaga 167488



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>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete
             sequence
          Length = 219634

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   acattcttcaatcatctttcatgt 325
             |||||||||||| |||||||||||
Sbjct: 29643 acattcttcaattatctttcatgt 29620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,315,093
Number of Sequences: 3902068
Number of extensions: 4315093
Number of successful extensions: 82083
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82021
Number of HSP's gapped (non-prelim): 62
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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