ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54b09 |
|---|---|
| Clone Library Name | barley_pub |
>RAD9A_HUMAN (Q99638) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) (hRAD9) Length = 391 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = +3 Query: 24 PDRPDKTGPWSQKE-----GTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 167 P P GP S++E T P + P K ++ I LAPVR+P P+P+ Sbjct: 331 PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSI-LAPVRSPQGPSPV 382
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 29.6 bits (65), Expect = 2.1 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = +3 Query: 75 PASDPRNK*NNVKSSGISLAPVRAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAV 254 P+ P ++ + KSS ISL V AP P+ S T S P + P P Sbjct: 197 PSVRPAHRSHQRKSSNISLPSVSAPPLPS----------ASLPTHVSNPPQAPPPPPTPT 246 Query: 255 VSLDSR 272 + LDS+ Sbjct: 247 IGLDSK 252
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 29.6 bits (65), Expect = 2.1 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 33 PDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPLKSFHKVGLESSSTGS 212 PD + K G+ S PR++ +K G L+ R + P K+ HKV L ++S Sbjct: 513 PDSQSAYVPKNGS---SGPRSQ--GLKDMGTGLSGPRKQSERRPRKT-HKVDLRAASDFL 566 Query: 213 SFPADSAKPVPL 248 P S +PVP+ Sbjct: 567 LMPQMSIQPVPV 578
>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low| density lipoprotein receptor defect B-complementing protein) Length = 980 Score = 28.9 bits (63), Expect = 3.5 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 278 SLSTIQRNHSQGNGLGGISGERRPC 204 +L T+ R H G G+G + GE + C Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317
>PYRB_THET8 (Q5SK66) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 302 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -2 Query: 100 YLFRGSEAG--HVPSFWLQGPVLSGRSGRKTYKT 5 Y+ R AG H + W++G V++G GR+ + T Sbjct: 101 YVIRADSAGVPHQATRWVKGAVINGGDGRRAHPT 134
>PYRB_THET2 (Q72KU0) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 302 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -2 Query: 100 YLFRGSEAG--HVPSFWLQGPVLSGRSGRKTYKT 5 Y+ R AG H + W++G V++G GR+ + T Sbjct: 101 YVIRADSAGVPHQATRWVKGAVINGGDGRRAHPT 134
>OPGG2_SHEON (Q8EDL2) Glucans biosynthesis protein G 2 precursor| Length = 528 Score = 28.1 bits (61), Expect = 6.0 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Frame = -3 Query: 261 AKPQPRERAW---RNQRGKKTLLSLTLVRLCEMT*EV*DKWEP---LRAQVKYHYF*RYF 100 A Q R AW N GK L+ L + E + WEP L+ Y Y Sbjct: 359 ANYQQRPSAWIEPLNDWGKGQLILLEIPSNAETNDNIVAYWEPQGGLKQAEPYRY----- 413 Query: 99 TYSVGRKRGMSPPFGSKARFYRADPGGRHTK 7 +Y + SP F +KAR R+ G + K Sbjct: 414 SYRITASND-SPSFTNKARVIRSSKGQKQAK 443
>PYRB_THEAQ (P96079) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 301 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -2 Query: 100 YLFRGSEAG--HVPSFWLQGPVLSGRSGRKTYKT 5 Y+ R AG H + W++G V++G GR+ + T Sbjct: 101 YVIRADSAGVPHQATRWVKGAVINGGDGRRAHPT 134
>HIS1_THET8 (Q5SM15) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 206 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 86 VGSGACPLLLAPRPGFIGPIR 24 +G GAC L L RPG GPIR Sbjct: 89 LGFGACRLSLIRRPGDTGPIR 109
>HIS1_THET2 (P62381) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 206 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 86 VGSGACPLLLAPRPGFIGPIR 24 +G GAC L L RPG GPIR Sbjct: 89 LGFGACRLSLIRRPGDTGPIR 109
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 16 SSARIGPIKPGLGAKRRGHAPLPTH 90 S+A GP P GA+ H P+ TH Sbjct: 455 SNAHPGPFPPSTGAQSTAHPPVSTH 479
>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast| precursor (EC 3.4.24.-) Length = 704 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -2 Query: 106 LFYLFRGSEAGHVPSFWLQGPVLSGRSGRK 17 LFYLFRG + G L GP+ GRS K Sbjct: 209 LFYLFRGGQGGAGGPGGLGGPMDFGRSKSK 238
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 16 SSARIGPIKPGLGAKRRGHAPLPTH 90 S+A GP P GA+ H P+ TH Sbjct: 454 SNAHPGPFPPSTGAQSTAHPPVSTH 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,962,578 Number of Sequences: 219361 Number of extensions: 895113 Number of successful extensions: 2387 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2386 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
