ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 1e-12
2gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4dbj|AK103660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
5dbj|AK073847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
6dbj|AK060028.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
7ref|NM_187572.1| Oryza sativa (japonica cultivar-group), predic... 78 2e-11
8tpe|BN000562.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 78 2e-11
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
10dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
11ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative... 42 1.1
12gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno... 42 1.1
13gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 42 1.1
14gb|AC090125.7| Homo sapiens chromosome 18, clone RP11-625N15, co... 42 1.1
15gb|AC094086.2| Homo sapiens chromosome 5 clone CTD-2170G1, compl... 42 1.1
16gb|AC073540.4| Homo sapiens chromosome 5 clone RP11-164A5, compl... 42 1.1
17gb|AC016645.5| Homo sapiens chromosome 5 clone RP11-54A24, compl... 42 1.1
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19gb|AC005690.8|AC005690 Homo sapiens chromosome 4 clone C0483I23,... 42 1.1
20dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
21tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 1.1
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
23emb|BX294195.4| Mouse DNA sequence from clone RP23-59F2 on chrom... 42 1.1
24emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chr... 42 1.1
25gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic ge... 40 4.4
26gb|AC108824.17| Mus musculus chromosome 7, clone RP23-81B14, com... 40 4.4
27gb|AC009449.7| Homo sapiens chromosome 17, clone CTD-2291H15, co... 40 4.4
28gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome... 40 4.4
29gb|AC090229.15| Homo sapiens chromosome 18, clone RP11-873E20, c... 40 4.4
30gb|AC144842.2| Homo sapiens chromosome 17, clone XXfos-801612G12... 40 4.4
31ref|XM_793257.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.4
32emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 4.4
33emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chr... 40 4.4
34gb|BC055422.1| Homo sapiens cDNA clone IMAGE:5270387 40 4.4
35gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 40 4.4
36gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, co... 40 4.4
37gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, co... 40 4.4
38gb|AC138688.2| Homo sapiens chromosome 17, clone RP11-300H14, co... 40 4.4
39gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, c... 40 4.4
40emb|AL603630.11| Mouse DNA sequence from clone RP23-350M23 on ch... 40 4.4
41gb|AC115689.22| Mus musculus chromosome 9, clone RP23-166A9, com... 40 4.4
42gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.4
43gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 4.4
44gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosom... 40 4.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                           
Query: 275     tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
               |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1152274 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1152333

                
Query: 335     a 335
               |
Sbjct: 1152334 a 1152334
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>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 275   tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
             |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 55978 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 56037

              
Query: 335   a 335
             |
Sbjct: 56038 a 56038
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                           
Query: 275     tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
               |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1152272 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1152331

                
Query: 335     a 335
               |
Sbjct: 1152332 a 1152332
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>dbj|AK103660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135H09, full
            insert sequence
          Length = 1506

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 275  tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
            |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1166 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1107

             
Query: 335  a 335
            |
Sbjct: 1106 a 1106
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>dbj|AK073847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069F06, full
            insert sequence
          Length = 1491

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 275  tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
            |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1166 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1107

             
Query: 335  a 335
            |
Sbjct: 1106 a 1106
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>dbj|AK060028.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F06, full
           insert sequence
          Length = 1147

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 275 tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 334
           |||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 870 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 811

            
Query: 335 a 335
           |
Sbjct: 810 a 810
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>ref|NM_187572.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 936

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                      
Query: 293 accctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 926 accctgcagtttgtcctgatggtgccggcgttgccggtgagca 884
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>tpe|BN000562.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx33 gene for
            class III peroxidase 33 precursor, exons 1-3
          Length = 3361

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                       
Query: 293  accctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
            |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3351 accctgcagtttgtcctgatggtgccggcgttgccggtgagca 3309
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 275      tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccg 319
                |||||||| |||| | | ||||||||||| |||||||||||||||
Sbjct: 22362299 tcgatcgatcagctggccaccctgcagttggtcctgatggtgccg 22362255
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0566A10
          Length = 174367

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 275    tcgatcgaccagccgacgaccctgcagtttgtcctgatggtgccg 319
              |||||||| |||| | | ||||||||||| |||||||||||||||
Sbjct: 140722 tcgatcgatcagctggccaccctgcagttggtcctgatggtgccg 140678
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>ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative peroxidase
            (OSJNBa0040D23.2), mRNA
          Length = 1204

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 291  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
            ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 1063 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 1019
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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 291   cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
             ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 98407 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 98363
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 291   cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
             ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 23053 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 23009
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>gb|AC090125.7| Homo sapiens chromosome 18, clone RP11-625N15, complete sequence
          Length = 163228

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      aagtagctttttattaagcac 27
              |||||||||||||||||||||
Sbjct: 101362 aagtagctttttattaagcac 101382
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>gb|AC094086.2| Homo sapiens chromosome 5 clone CTD-2170G1, complete sequence
          Length = 100853

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   aagcagtgaaagaaagtacag 138
             |||||||||||||||||||||
Sbjct: 26317 aagcagtgaaagaaagtacag 26337
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>gb|AC073540.4| Homo sapiens chromosome 5 clone RP11-164A5, complete sequence
          Length = 12142

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  aagcagtgaaagaaagtacag 138
            |||||||||||||||||||||
Sbjct: 7317 aagcagtgaaagaaagtacag 7337
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>gb|AC016645.5| Homo sapiens chromosome 5 clone RP11-54A24, complete sequence
          Length = 10358

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  aagcagtgaaagaaagtacag 138
            |||||||||||||||||||||
Sbjct: 4687 aagcagtgaaagaaagtacag 4707
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 291      cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
                ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 20382905 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 20382861
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>gb|AC005690.8|AC005690 Homo sapiens chromosome 4 clone C0483I23, complete sequence
          Length = 193424

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 140    atgcaagatcaaggagaaaag 160
              |||||||||||||||||||||
Sbjct: 103968 atgcaagatcaaggagaaaag 103948
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>dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E05, full
            insert sequence
          Length = 1422

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 291  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
            ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 1172 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 1128
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>tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx128 gene for
            class III peroxidase 128 precursor, exons 1-3
          Length = 1794

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 291  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
            ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 1789 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 1745
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 291      cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagca 335
                ||||||||||||||| |||||   ||||| || ||||||||||||
Sbjct: 20394177 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagca 20394133
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>emb|BX294195.4| Mouse DNA sequence from clone RP23-59F2 on chromosome X, complete
             sequence
          Length = 67271

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    aatcatgtgatcatgtcatta 72
             |||||||||||||||||||||
Sbjct: 11410 aatcatgtgatcatgtcatta 11430
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>emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chromosome X, complete
             sequence
          Length = 169807

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 103   aggctaagggaacacaagcagtgaa 127
             |||||||||||||||||| ||||||
Sbjct: 87763 aggctaagggaacacaagtagtgaa 87787
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>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete
            sequence
          Length = 113193

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  tgccggtgttgccggtgagc 334
            ||||||||||||||||||||
Sbjct: 5555 tgccggtgttgccggtgagc 5536
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>gb|AC108824.17| Mus musculus chromosome 7, clone RP23-81B14, complete sequence
          Length = 182109

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    catacagaggctaagggaacacaa 119
             ||||||||||||||| ||||||||
Sbjct: 64431 catacagaggctaagagaacacaa 64408
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>gb|AC009449.7| Homo sapiens chromosome 17, clone CTD-2291H15, complete sequence
          Length = 103577

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aacacaagcagtgaaagaaa 132
             ||||||||||||||||||||
Sbjct: 83542 aacacaagcagtgaaagaaa 83561
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>gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome 9, complete sequence
          Length = 208028

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     catgtgatcatgtcattacataca 78
              ||||||||||| ||||||||||||
Sbjct: 107835 catgtgatcatctcattacataca 107812
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>gb|AC090229.15| Homo sapiens chromosome 18, clone RP11-873E20, complete sequence
          Length = 192106

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    agataatacatacagaggct 107
             ||||||||||||||||||||
Sbjct: 27126 agataatacatacagaggct 27107
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>gb|AC144842.2| Homo sapiens chromosome 17, clone XXfos-801612G12, complete sequence
          Length = 40479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aacacaagcagtgaaagaaa 132
             ||||||||||||||||||||
Sbjct: 26247 aacacaagcagtgaaagaaa 26228
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>ref|XM_793257.1| PREDICTED: Strongylocentrotus purpuratus similar to dynein,
           cytoplasmic, heavy chain 1 (LOC593792), partial mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 caagatcaaggagaaaagagagag 166
           ||||||| ||||||||||||||||
Sbjct: 849 caagatccaggagaaaagagagag 872
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>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              3/8
          Length = 347625

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    tggtgccggtgttgccggtg 331
              ||||||||||||||||||||
Sbjct: 336124 tggtgccggtgttgccggtg 336143
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>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a
             novel gene, a glyoxalase 1 (Glo1) pseudogene and a
             pseudogene similar to part of nuclear pore membrane
             protein 121 Pom121, complete sequence
          Length = 212255

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agtatgcaagatcaaggaga 156
             ||||||||||||||||||||
Sbjct: 13951 agtatgcaagatcaaggaga 13932
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>gb|BC055422.1| Homo sapiens cDNA clone IMAGE:5270387
          Length = 5069

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  aacacaagcagtgaaagaaa 132
            ||||||||||||||||||||
Sbjct: 3246 aacacaagcagtgaaagaaa 3265
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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     agataatacatacagaggct 107
              ||||||||||||||||||||
Sbjct: 180253 agataatacatacagaggct 180234
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>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence
          Length = 226696

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aacacaagcagtgaaagaaa 132
             ||||||||||||||||||||
Sbjct: 97011 aacacaagcagtgaaagaaa 96992
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>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence
          Length = 200420

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aacacaagcagtgaaagaaa 132
              ||||||||||||||||||||
Sbjct: 151295 aacacaagcagtgaaagaaa 151314
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>gb|AC138688.2| Homo sapiens chromosome 17, clone RP11-300H14, complete sequence
          Length = 183093

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aacacaagcagtgaaagaaa 132
              ||||||||||||||||||||
Sbjct: 166494 aacacaagcagtgaaagaaa 166513
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>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence
          Length = 158617

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aacacaagcagtgaaagaaa 132
             ||||||||||||||||||||
Sbjct: 45026 aacacaagcagtgaaagaaa 45045
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>emb|AL603630.11| Mouse DNA sequence from clone RP23-350M23 on chromosome 9, complete
             sequence
          Length = 202081

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    catgtgatcatgtcattacataca 78
             ||||||||||| ||||||||||||
Sbjct: 40353 catgtgatcatctcattacataca 40330
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>gb|AC115689.22| Mus musculus chromosome 9, clone RP23-166A9, complete sequence
          Length = 221548

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 55  catgtgatcatgtcattacataca 78
           ||||||||||| ||||||||||||
Sbjct: 810 catgtgatcatctcattacataca 833
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 310     gatggtgccggtgttgccggtgag 333
               |||| |||||||||||||||||||
Sbjct: 2281471 gatgttgccggtgttgccggtgag 2281494
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tgatggtgccggtgttgccg 328
              ||||||||||||||||||||
Sbjct: 693720 tgatggtgccggtgttgccg 693701
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>gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosome 12, complete sequence
          Length = 220909

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     catacagaggctaagggaacacaa 119
              ||||||||||||||| ||||||||
Sbjct: 115561 catacagaggctaagagaacacaa 115538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,769,751
Number of Sequences: 3902068
Number of extensions: 2769751
Number of successful extensions: 63780
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63567
Number of HSP's gapped (non-prelim): 213
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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