>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence
          Length = 203300

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    acatcatctctacaatacaaaaa 43
             |||||||||||||||||||||||
Sbjct: 79319 acatcatctctacaatacaaaaa 79297

>dbj|AP001462.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-869B15, complete
             sequence
          Length = 106886

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    acatcatctctacaatacaaaaa 43
             |||||||||||||||||||||||
Sbjct: 11985 acatcatctctacaatacaaaaa 11963

>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete
             sequence
          Length = 185010

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    catcatctctacaatacaaaaa 43
             ||||||||||||||||||||||
Sbjct: 76774 catcatctctacaatacaaaaa 76795

>gb|AC102297.12| Mus musculus chromosome 1, clone RP24-392K18, complete sequence
          Length = 167248

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   aataatttatagtatacaaca 281
             |||||||||||||||||||||
Sbjct: 26311 aataatttatagtatacaaca 26291

>gb|AC145123.2| Homo sapiens chromosome 8, clone XXfos-82949F4, complete sequence
          Length = 37635

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 276   acaacacttcctaggtaatttttatacca 304
             |||||||||||||  ||||||||||||||
Sbjct: 14636 acaacacttcctatataatttttatacca 14664

>gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, complete sequence
          Length = 100079

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 276   acaacacttcctaggtaatttttatacca 304
             |||||||||||||  ||||||||||||||
Sbjct: 87644 acaacacttcctatataatttttatacca 87616

>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     acatacatcatctctacaat 36
              ||||||||||||||||||||
Sbjct: 613862 acatacatcatctctacaat 613881

>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence
          Length = 117818

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    acatacatcatctctacaat 36
             ||||||||||||||||||||
Sbjct: 36224 acatacatcatctctacaat 36243

>gb|AY509253.1| Ostreid herpesvirus 1, complete genome
          Length = 207439

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     catctctacaatacaaaaac 44
              ||||||||||||||||||||
Sbjct: 206409 catctctacaatacaaaaac 206390



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     catctctacaatacaaaaac 44
              ||||||||||||||||||||
Sbjct: 185552 catctctacaatacaaaaac 185571

>emb|AL645469.18| Mouse DNA sequence from clone RP23-340E18 on chromosome 11 Contains the
              Mylc2a gene for myosin light chain, regulatory A, the Gck
              gene for glucokinase, a novel gene, the gene for prenylated
              SNARE protein (Ykt6), the Camk2d gene for
              calcium/calmodulin-dependent protein kinase II delta and
              two CpG islands, complete sequence
          Length = 172356

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 239    ctccagtatctggtgatctggcaa 262
              ||||||| ||||||||||||||||
Sbjct: 127456 ctccagtttctggtgatctggcaa 127479

>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11,
             complete sequence
          Length = 133334

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   tatagtatacaacacttcct 287
             ||||||||||||||||||||
Sbjct: 55319 tatagtatacaacacttcct 55300

>gb|AC108073.3| Homo sapiens BAC clone RP11-713C19 from 4, complete sequence
          Length = 225639

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    gatcaccagaatttgcaaat 226
              ||||||||||||||||||||
Sbjct: 149966 gatcaccagaatttgcaaat 149985

>gb|AC021148.8| Homo sapiens BAC clone RP11-472B18 from 4, complete sequence
          Length = 124102

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaataaatgctagtgtacaa 153
             ||||||||||||||||||||
Sbjct: 87729 aaataaatgctagtgtacaa 87748

>gb|AC013718.6| Homo sapiens BAC clone RP11-116I17 from 2, complete sequence
          Length = 177855

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tcatctctacaatacaaaaa 43
             ||||||||||||||||||||
Sbjct: 71264 tcatctctacaatacaaaaa 71283

>emb|AJ272152.1|HSA272152 Homo sapiens partial ugd gene for UDPglucose dehydrogenase, exon 2
          Length = 876

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 aaataaatgctagtgtacaa 153
           ||||||||||||||||||||
Sbjct: 116 aaataaatgctagtgtacaa 97

>emb|AJ272274.1|HSA272274 Homo sapiens partial ugd gene for UDP-glucose dehydrogenase, exon 2
          Length = 876

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 aaataaatgctagtgtacaa 153
           ||||||||||||||||||||
Sbjct: 116 aaataaatgctagtgtacaa 97


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,262,043
Number of Sequences: 3902068
Number of extensions: 3262043
Number of successful extensions: 86893
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86856
Number of HSP's gapped (non-prelim): 37
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)