ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDE6_CAEEL (Q9N2V9) Probable 3',5'-cyclic phosphodiesterase pde-... 30 1.2
2SYI_PYRFU (P46214) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 3.6
3SYI_PYRHO (O58792) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.9
4SYI_PYRAB (Q9V072) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.9

>PDE6_CAEEL (Q9N2V9) Probable 3',5'-cyclic phosphodiesterase pde-6 (EC|
           3.1.4.17)
          Length = 760

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 171 WRFWVLHSVAMRD*HAIGLIWLAFVTRRGWCFCVDCSDDKL 49
           W+F +LH   + D HA+  + +    R   C  + CSDD L
Sbjct: 444 WKFDILHLEKVSDHHALSQVGMKVFERWKVCDVLGCSDDLL 484



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>SYI_PYRFU (P46214) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1066

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 190 VASEPRLALLGSTFRGDARLTCDWI 116
           +  +P  A +G  F+GDARL   WI
Sbjct: 900 ITVKPNFAKVGPEFKGDARLVAKWI 924



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>SYI_PYRHO (O58792) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1066

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 181 EPRLALLGSTFRGDARLTCDWID 113
           +P  A +G  F+GD+RL   WI+
Sbjct: 903 KPNFAKVGPEFKGDSRLVAKWIN 925



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>SYI_PYRAB (Q9V072) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1067

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 181 EPRLALLGSTFRGDARLTCDWID 113
           +P  A LG  F+GDA++   WI+
Sbjct: 903 KPNFAKLGPEFKGDAKIIAKWIN 925


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,671,002
Number of Sequences: 219361
Number of extensions: 720488
Number of successful extensions: 1996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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