ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRK1_SCHPO (P47946) Potassium transport protein 1 30 2.1
2NINAG_DROME (Q9VGP2) Neither inactivation nor afterpotential pro... 29 2.7
3DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV) 28 4.6
4BGAL_BACST (P19668) Beta-galactosidase 1 (EC 3.2.1.23) (Beta-gal... 28 7.9

>TRK1_SCHPO (P47946) Potassium transport protein 1|
          Length = 841

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +1

Query: 58  ANCSVSQLFNIRCKLVTHG*QNLHKHGGIPLSVKHGVTGPSYHIFLFCESD*QYHMHLQL 237
           +NCS+S  F    KLV    +   +H G+P +V   +  PS    L  E D Q      +
Sbjct: 770 SNCSLSARFTTISKLVIIALELRGRHRGLPRAVDRAILLPSEKNNLKEEEDYQRRHGFSI 829

Query: 238 IRTRGS 255
              RGS
Sbjct: 830 DNARGS 835



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>NINAG_DROME (Q9VGP2) Neither inactivation nor afterpotential protein G|
           precursor (EC 1.-.-.-)
          Length = 581

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 121 NLHKHGGIPLSVKHGVTGPS 180
           NLH H  +PL V  GVTGP+
Sbjct: 307 NLHDHFNLPLFVSMGVTGPT 326



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>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 71  SLNFSTYDVSWSLMDDKIYISTEVYPYRLNMVSP 172
           S N STYD  W ++++K+Y   E    RL   SP
Sbjct: 254 SQNISTYDECWQVIEEKLYPELE---KRLERASP 284



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>BGAL_BACST (P19668) Beta-galactosidase 1 (EC 3.2.1.23) (Beta-galactosidase I)|
           (Lactase)
          Length = 672

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  KAQNLTKQNWPTVLSLNFSTYDVSWSLMDDKIY 127
           + Q      W  ++ +N + Y+V+ SL +DKIY
Sbjct: 607 EVQQRETDEWKYLIIINHNDYEVTLSLPEDKIY 639


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,229,471
Number of Sequences: 219361
Number of extensions: 615796
Number of successful extensions: 1182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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