ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54a10 |
|---|---|
| Clone Library Name | barley_pub |
>POL_RSVSA (Q04095) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN) (pp32)] Length = 895 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 52 QNCKHQF*NHNRPTFPSDGNAIKIQLKTPQSNKGKTSKYFLGRSNQSIQCP*IKTSVWFP 231 +N K H RPT ++G +KI+++T + KG + GR +++ +W P Sbjct: 775 ENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKG-WNVLVWGRGYAAVKNRDTDKVIWVP 833 Query: 232 S 234 S Sbjct: 834 S 834
>POL_RSVP (P03354) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN) (pp32)] Length = 895 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 52 QNCKHQF*NHNRPTFPSDGNAIKIQLKTPQSNKGKTSKYFLGRSNQSIQCP*IKTSVWFP 231 +N K H RPT ++G +KI+++T + KG + GR +++ +W P Sbjct: 775 ENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKG-WNVLVWGRGYAAVKNRDTDKVIWVP 833 Query: 232 S 234 S Sbjct: 834 S 834
>POL_ALV (Q7SQ98) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN) (pp32)] Length = 895 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 52 QNCKHQF*NHNRPTFPSDGNAIKIQLKTPQSNKGKTSKYFLGRSNQSIQCP*IKTSVWFP 231 +N K H RPT ++G +KI+++T + KG + GR +++ +W P Sbjct: 775 ENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKG-WNVLVWGRGYAAVKNRDTDKVIWVP 833 Query: 232 S 234 S Sbjct: 834 S 834
>IL1B_MOUSE (P10749) Interleukin-1 beta precursor (IL-1 beta)| Length = 269 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 76 NHNRPTFPSDGNAIKIQLKTPQSNKGKTSKYFLGRSNQSIQ 198 N P F SD N + ++ PQ KG + LG ++SIQ Sbjct: 8 NCEMPPFDSDENDLFFEVDGPQKMKGCFQTFDLGCPDESIQ 48
>POL_RSVSB (O92956) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN) (pp32)] Length = 895 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 52 QNCKHQF*NHNRPTFPSDGNAIKIQLKTPQSNKGKTSKYFLGRSNQSIQCP*IKTSVWFP 231 +N K H RPT ++G +KI+++T + KG + GR +++ +W P Sbjct: 775 ENTKTPVQKHWRPTVLTEGPPVKIRIETGEWEKG-WNVLVWGRGYAAVKNRDTDKVIWVP 833 Query: 232 S 234 S Sbjct: 834 S 834
>MDR65_DROME (Q00748) Multidrug resistance protein homolog 65 (EC 3.6.3.44)| (P-glycoprotein 65) Length = 1302 Score = 27.7 bits (60), Expect = 7.5 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -3 Query: 76 FRTDAYNSVGWFFYGYDQC 20 FR Y +GW F+G+ C Sbjct: 37 FRFSTYGEIGWLFFGFIMC 55
>POLG_LMVE (P89876) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3255 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +2 Query: 5 GLQKDTLVIPIKKPPYRIVSISSETTTDQHSHQTE 109 G++KD + IP K P RIVSI +DQ H+ E Sbjct: 2856 GIKKDGIFIP-KLEPERIVSILEWDRSDQPVHRLE 2889
>POLG_LMV0 (P31999) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3255 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +2 Query: 5 GLQKDTLVIPIKKPPYRIVSISSETTTDQHSHQTE 109 G++KD + IP K P RIVSI +DQ H+ E Sbjct: 2856 GIKKDGIFIP-KLEPERIVSILEWDRSDQPVHRLE 2889
>M3K5_HUMAN (Q99683) Mitogen-activated protein kinase kinase kinase 5 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 5) (MEK kinase 5) (MEKK 5) (Apoptosis signal-regulating kinase 1) (ASK-1) Length = 1374 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +2 Query: 20 TLVIPIKKPPYRIVSISS---ETTTDQHSHQTEMPSKSS*KLPKATRVRHLNISWVEAIN 190 T+++P +P + + S S + D E PS + + P+A + S V ++ Sbjct: 1168 TILVPELRPHFSLASESDTADQEDLDVEDDHEEQPSNQTVRRPQAVIEDAVATSGVSTLS 1227 Query: 191 QYNAHESKLAYGSL 232 +H+S+ A+ SL Sbjct: 1228 STVSHDSQSAHRSL 1241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,355,164 Number of Sequences: 219361 Number of extensions: 969967 Number of successful extensions: 2917 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2917 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
