>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  110 bits (274), Expect = 1e-24
 Identities = 51/67 (76%), Positives = 58/67 (86%)
 Frame = -2

Query: 366  DEGGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAAS 187
            DE GSKRKRVFSPDD+TRGAARARL LE+FAALP+DE+DGSK  EM  K+K+D +KDAA 
Sbjct: 875  DEVGSKRKRVFSPDDITRGAARARLFLEEFAALPMDEMDGSKILEMATKMKADLQKDAAD 934

Query: 186  NPWLHQF 166
            NPWL QF
Sbjct: 935  NPWLQQF 941

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 30/68 (44%), Positives = 46/68 (67%)
 Frame = -2

Query: 366  DEGGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAAS 187
            +E G ++ R   PD+V+RGA RA   L++FAA+PLD+++   + + V ++K + EKDAA 
Sbjct: 870  EESGKRKSREDDPDEVSRGAERAHKFLKEFAAIPLDKMELKDSLQRVREMKDELEKDAAD 929

Query: 186  NPWLHQFL 163
              WL QFL
Sbjct: 930  CHWLRQFL 937

>MLP28_ARATH (Q9SSK9) MLP-like protein 28|
          Length = 335

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 261 DEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 166
           DEV  ++A+ +V KL++D E  A+++ + H F
Sbjct: 12  DEVKKTEASSLVGKLETDVEIKASADKFHHMF 43

>PNCB_METAC (Q8TMW6) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 404

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 173 TSSSEWNGKEWIADPSVTARQLGT 102
           T   EWNGKEW  + S T+  + T
Sbjct: 133 TIEKEWNGKEWDGNISATSESILT 156

>RFCL_METTH (O26342) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit) (mthRFC large subunit)
          Length = 479

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 33  QKDLVENLVDNRFCLLALRKGKDRPKLTRSNRRISDPFLSIPFRGTGVARDY 188
           +KD   NL D    + A+ K +D  K+  + R   DP L + F    V R+Y
Sbjct: 220 EKDATSNLFD---AVRAVLKSRDVSKVREAMRVDDDPTLVLEFIAENVPREY 268

>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3|
          Length = 574

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 215 NQTSRKTQPVIPGYTSSSEWNGKEW--IADPSVTAR 114
           + TSR TQP +    +S  W   EW   A PS T R
Sbjct: 197 SSTSRGTQPSLASAETSGHWGKGEWKGSAAPSPTVR 232

>YHDT_BACSU (O07589) Hypothetical UPF0053 protein yhdT|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 300 ARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 163
           ARLL   F   P  E DGS + E +  L S+  K+   NP  ++++
Sbjct: 161 ARLLCGMFGLKPASEHDGSHSEEELRMLLSESLKNGEINPSEYKYV 206

>SHH_HUMAN (Q15465) Sonic hedgehog protein precursor (SHH) (HHG-1) [Contains:|
           Sonic hedgehog protein N-product; Sonic hedgehog protein
           C-product]
          Length = 462

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 366 DEGGSKRKRVFSPDD-VTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEK 199
           ++GG+K  +  SP D V     + RLL  DF    LD  DG+K    V + +   E+
Sbjct: 208 EQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTF-LDRDDGAKKVFYVIETREPRER 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,727,486
Number of Sequences: 219361
Number of extensions: 806714
Number of successful extensions: 1914
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)