Clone Name | rbastl54a06 |
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Clone Library Name | barley_pub |
>ref|XM_475584.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2607 Score = 218 bits (110), Expect = 1e-53 Identities = 158/174 (90%) Strand = Plus / Minus Query: 209 gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268 |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 2592 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2533 Query: 269 cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328 |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| || Sbjct: 2532 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2473 Query: 329 caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2472 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2419
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 218 bits (110), Expect = 1e-53 Identities = 158/174 (90%) Strand = Plus / Plus Query: 209 gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268 |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 2322219 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2322278 Query: 269 cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328 |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| || Sbjct: 2322279 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2322338 Query: 329 caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2322339 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2322392
>dbj|AK103601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133F19, full insert sequence Length = 2987 Score = 218 bits (110), Expect = 1e-53 Identities = 158/174 (90%) Strand = Plus / Minus Query: 209 gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268 |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 2812 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2753 Query: 269 cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328 |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| || Sbjct: 2752 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2693 Query: 329 caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2692 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2639
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 218 bits (110), Expect = 1e-53 Identities = 158/174 (90%) Strand = Plus / Plus Query: 209 gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268 |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 50134 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 50193 Query: 269 cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328 |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| || Sbjct: 50194 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 50253 Query: 329 caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 50254 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 50307
>dbj|AK064405.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H08, full insert sequence Length = 1594 Score = 210 bits (106), Expect = 3e-51 Identities = 157/174 (90%) Strand = Plus / Minus Query: 209 gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268 |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 1373 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 1314 Query: 269 cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328 |||||| ||||||| ||||| || ||||||||||||||||| ||||| |||||||| || Sbjct: 1313 cttgtcatggaggttattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 1254 Query: 329 caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 1253 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 1200
>ref|XM_370508.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG07005.4) partial mRNA Length = 852 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 caggggaggaacaccaccgacatc 338 |||| ||||||||||||||||||| Sbjct: 64 caggagaggaacaccaccgacatc 87
>gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome 5, complete sequence Length = 205734 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 catccactcagcagcccacggtgc 210 |||||||||||||||||| ||||| Sbjct: 96213 catccactcagcagcccaaggtgc 96190
>emb|AL583852.6| Human DNA sequence from clone RP11-17G2 on chromosome 10, complete sequence Length = 56701 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 ggtgggcgcaggggaggaacacca 330 |||||| ||||||||||||||||| Sbjct: 42799 ggtgggggcaggggaggaacacca 42822
>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin), a CpG island and a novel gene, complete sequence Length = 170821 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatccattatccatcatct 26 |||||||||||||||||||| Sbjct: 78874 ccatccattatccatcatct 78893
>gb|AC016820.9| Homo sapiens chromosome 10 clone RP11-31E13, complete sequence Length = 194364 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 ggtgggcgcaggggaggaacacca 330 |||||| ||||||||||||||||| Sbjct: 40345 ggtgggggcaggggaggaacacca 40368
>gb|AC012084.9| Homo sapiens 10 BAC RP11-943E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167441 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 ggtgggcgcaggggaggaacacca 330 |||||| ||||||||||||||||| Sbjct: 129266 ggtgggggcaggggaggaacacca 129289
>gb|AC174467.2| Medicago truncatula chromosome 7 BAC clone mth2-44j14, complete sequence Length = 127007 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atccattatccatcatcttt 28 |||||||||||||||||||| Sbjct: 22283 atccattatccatcatcttt 22302
>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence Length = 222180 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 catccactcagcagcccacggtgc 210 |||||||||||||||||| ||||| Sbjct: 218350 catccactcagcagcccaaggtgc 218373
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 caaccatccattatccatca 23 |||||||||||||||||||| Sbjct: 25812318 caaccatccattatccatca 25812337
>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence Length = 206074 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gaatgcaaaatctttcatct 183 |||||||||||||||||||| Sbjct: 189648 gaatgcaaaatctttcatct 189629
>gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromosome unknown, complete sequence Length = 238361 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 gggcacagaccctgcgctggatgt 234 |||||||||||||| ||||||||| Sbjct: 218346 gggcacagaccctgagctggatgt 218323
>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete sequence Length = 248284 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gggcacagaccctgcgctggatgt 234 |||||||||||||| ||||||||| Sbjct: 171884 gggcacagaccctgagctggatgt 171907
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 caaccatccattatccatca 23 |||||||||||||||||||| Sbjct: 25740494 caaccatccattatccatca 25740513
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 caaccatccattatccatca 23 |||||||||||||||||||| Sbjct: 33769 caaccatccattatccatca 33788 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,514,409 Number of Sequences: 3902068 Number of extensions: 2514409 Number of successful extensions: 46769 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46703 Number of HSP's gapped (non-prelim): 66 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)