ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475584.1| Oryza sativa (japonica cultivar-group), predic... 218 1e-53
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
3dbj|AK103601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome... 218 1e-53
5dbj|AK064405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 3e-51
6ref|XM_370508.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 5.3
7gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome... 40 5.3
8emb|AL583852.6| Human DNA sequence from clone RP11-17G2 on chrom... 40 5.3
9emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chr... 40 5.3
10gb|AC016820.9| Homo sapiens chromosome 10 clone RP11-31E13, comp... 40 5.3
11gb|AC012084.9| Homo sapiens 10 BAC RP11-943E22 (Roswell Park Can... 40 5.3
12gb|AC174467.2| Medicago truncatula chromosome 7 BAC clone mth2-4... 40 5.3
13gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome... 40 5.3
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
15gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, comple... 40 5.3
16gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromoso... 40 5.3
17gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromos... 40 5.3
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
19emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.3

>ref|XM_475584.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2607

 Score =  218 bits (110), Expect = 1e-53
 Identities = 158/174 (90%)
 Strand = Plus / Minus

                                                                        
Query: 209  gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268
            |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2592 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2533

                                                                        
Query: 269  cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328
            |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct: 2532 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2473

                                                                  
Query: 329  caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382
             ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 2472 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2419



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  218 bits (110), Expect = 1e-53
 Identities = 158/174 (90%)
 Strand = Plus / Plus

                                                                           
Query: 209     gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268
               |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2322219 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2322278

                                                                           
Query: 269     cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328
               |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct: 2322279 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2322338

                                                                     
Query: 329     caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382
                ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 2322339 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2322392



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>dbj|AK103601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133F19, full
            insert sequence
          Length = 2987

 Score =  218 bits (110), Expect = 1e-53
 Identities = 158/174 (90%)
 Strand = Plus / Minus

                                                                        
Query: 209  gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268
            |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2812 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 2753

                                                                        
Query: 269  cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328
            |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct: 2752 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 2693

                                                                  
Query: 329  caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382
             ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 2692 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 2639



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>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03,
             complete sequence
          Length = 107870

 Score =  218 bits (110), Expect = 1e-53
 Identities = 158/174 (90%)
 Strand = Plus / Plus

                                                                         
Query: 209   gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268
             |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 50134 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 50193

                                                                         
Query: 269   cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328
             |||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct: 50194 cttgtcatggaggtcattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 50253

                                                                   
Query: 329   caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382
              ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 50254 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 50307



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>dbj|AK064405.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H08, full
            insert sequence
          Length = 1594

 Score =  210 bits (106), Expect = 3e-51
 Identities = 157/174 (90%)
 Strand = Plus / Minus

                                                                        
Query: 209  gcgggcacagaccctgcgctggatgtgggtccggcacgacgggcactccttcatcccctg 268
            |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 1373 gcgggcgcacaccctgcgctggatgggggtccggcacgatgggcactccttcatcccttg 1314

                                                                        
Query: 269  cttgtcgtggaggtcgttgcacttggcgcagaccacctggtgggcgcaggggaggaacac 328
            |||||| |||||||  ||||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct: 1313 cttgtcatggaggttattgcatttcgcgcagaccacctggtgcgcgcaagggaggaagac 1254

                                                                  
Query: 329  caccgacatctcctcgctcaggcacatgacgcactcgcggtcgcgctggatgtc 382
             ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 1253 gaccgacatctcctcgctcaggcacatgacgcactcccggtcacgctgtatgtc 1200



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>ref|XM_370508.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG07005.4) partial mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 caggggaggaacaccaccgacatc 338
           |||| |||||||||||||||||||
Sbjct: 64  caggagaggaacaccaccgacatc 87



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>gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome 5, complete sequence
          Length = 205734

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   catccactcagcagcccacggtgc 210
             |||||||||||||||||| |||||
Sbjct: 96213 catccactcagcagcccaaggtgc 96190



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>emb|AL583852.6| Human DNA sequence from clone RP11-17G2 on chromosome 10, complete
             sequence
          Length = 56701

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   ggtgggcgcaggggaggaacacca 330
             |||||| |||||||||||||||||
Sbjct: 42799 ggtgggggcaggggaggaacacca 42822



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>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part
             of the Accn1 gene for neuronal amiloride-sensitive cation
             channel 1 (degenerin), a CpG island and a novel gene,
             complete sequence
          Length = 170821

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     ccatccattatccatcatct 26
             ||||||||||||||||||||
Sbjct: 78874 ccatccattatccatcatct 78893



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>gb|AC016820.9| Homo sapiens chromosome 10 clone RP11-31E13, complete sequence
          Length = 194364

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   ggtgggcgcaggggaggaacacca 330
             |||||| |||||||||||||||||
Sbjct: 40345 ggtgggggcaggggaggaacacca 40368



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>gb|AC012084.9| Homo sapiens 10 BAC RP11-943E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167441

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 307    ggtgggcgcaggggaggaacacca 330
              |||||| |||||||||||||||||
Sbjct: 129266 ggtgggggcaggggaggaacacca 129289



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>gb|AC174467.2| Medicago truncatula chromosome 7 BAC clone mth2-44j14, complete
             sequence
          Length = 127007

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     atccattatccatcatcttt 28
             ||||||||||||||||||||
Sbjct: 22283 atccattatccatcatcttt 22302



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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    catccactcagcagcccacggtgc 210
              |||||||||||||||||| |||||
Sbjct: 218350 catccactcagcagcccaaggtgc 218373



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        caaccatccattatccatca 23
                ||||||||||||||||||||
Sbjct: 25812318 caaccatccattatccatca 25812337



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>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence
          Length = 206074

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gaatgcaaaatctttcatct 183
              ||||||||||||||||||||
Sbjct: 189648 gaatgcaaaatctttcatct 189629



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>gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromosome unknown, complete
              sequence
          Length = 238361

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    gggcacagaccctgcgctggatgt 234
              |||||||||||||| |||||||||
Sbjct: 218346 gggcacagaccctgagctggatgt 218323



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>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete
              sequence
          Length = 248284

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    gggcacagaccctgcgctggatgt 234
              |||||||||||||| |||||||||
Sbjct: 171884 gggcacagaccctgagctggatgt 171907



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        caaccatccattatccatca 23
                ||||||||||||||||||||
Sbjct: 25740494 caaccatccattatccatca 25740513



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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     caaccatccattatccatca 23
             ||||||||||||||||||||
Sbjct: 33769 caaccatccattatccatca 33788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,514,409
Number of Sequences: 3902068
Number of extensions: 2514409
Number of successful extensions: 46769
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46703
Number of HSP's gapped (non-prelim): 66
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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