ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
4dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA... 105 1e-19
5emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4,... 96 1e-16
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
7dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
9dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA... 94 4e-16
10emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, ex... 82 2e-12
11emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein 82 2e-12
12emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) 62 1e-06
13gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 50 0.006
14gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) ... 50 0.006
15gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.34
16gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.34
17emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 44 0.34
18gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosom... 42 1.3
19gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, comp... 42 1.3
20gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosom... 42 1.3
21emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) 42 1.3
22gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, comp... 42 1.3
23emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chro... 42 1.3
24gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, co... 42 1.3
25gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 42 1.3
26gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, comp... 42 1.3
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete s... 42 1.3
29gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complet... 42 1.3
30ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 1.3
31dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
33dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
34gb|AY110994.1| Zea mays CL1209_1 mRNA sequence 42 1.3
35ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); ... 40 5.3
36gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 5.3
37emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 5.3
38gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complet... 40 5.3
39gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's ... 40 5.3
40gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 40 5.3
41emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
42emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 5.3
43emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 5.3
44emb|BX538053.1|HSM806224 Homo sapiens genomic DNA; cDNA DKFZp686... 40 5.3
45gb|AC107628.4| Homo sapiens chromosome 8, clone CTD1-2009P10, co... 40 5.3
46gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequ... 40 5.3
47gb|AY048575.1| Xenopus laevis Pax6 gene, promoter and 5'UTR 40 5.3
48gb|AC163744.3| Pan troglodytes BAC clone CH251-376E11 from chrom... 40 5.3
49gb|AC175061.3| Pan troglodytes BAC clone CH251-572M8 from chromo... 40 5.3
50emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Co... 40 5.3
51gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 5.3
52emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in ... 40 5.3
53dbj|AP005367.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.3
54gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 40 5.3
55gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AH... 40 5.3
56gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox p... 40 5.3
57dbj|AP004295.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.3 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  105 bits (53), Expect = 1e-19
 Identities = 79/85 (92%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                            
Query: 316      acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 27506748 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 27506807

                                         
Query: 375      aa-aaagatccttatcacctagcaa 398
                ||  |||||||||||||||||||||
Sbjct: 27506808 aagcaagatccttatcacctagcaa 27506832
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score =  105 bits (53), Expect = 1e-19
 Identities = 79/85 (92%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                         
Query: 316   acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374
             |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98470 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 98529

                                      
Query: 375   aa-aaagatccttatcacctagcaa 398
             ||  |||||||||||||||||||||
Sbjct: 98530 aagcaagatccttatcacctagcaa 98554
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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
            insert sequence
          Length = 3437

 Score =  105 bits (53), Expect = 1e-19
 Identities = 79/85 (92%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 316  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3048 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2989

                                     
Query: 375  aa-aaagatccttatcacctagcaa 398
            ||  |||||||||||||||||||||
Sbjct: 2988 aagcaagatccttatcacctagcaa 2964
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>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3114

 Score =  105 bits (53), Expect = 1e-19
 Identities = 79/85 (92%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 316  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2728 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2669

                                     
Query: 375  aa-aaagatccttatcacctagcaa 398
            ||  |||||||||||||||||||||
Sbjct: 2668 aagcaagatccttatcacctagcaa 2644
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>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06,
             complete sequence
          Length = 125196

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                 
Query: 321   agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372
             |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 65171
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                    
Query: 321      agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372
                |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574330 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 28574381



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 211     aaacagaggcaacgagccagccaa 234
               |||||||| |||||||||||||||
Sbjct: 3500684 aaacagagccaacgagccagccaa 3500661
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>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full
            insert sequence
          Length = 3089

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 321  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2674
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>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full
            insert sequence
          Length = 3052

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 321  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2656
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>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 2957

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                               
Query: 322  gaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372
            ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2558
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>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9
          Length = 9947

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/80 (88%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                        
Query: 321  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 378
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 9006 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 8947

                                
Query: 379  agatccttatcacctagcaa 398
             |||||||||||||||||||
Sbjct: 8946 ggatccttatcacctagcaa 8927
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>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/80 (88%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                        
Query: 321  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 378
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 2784 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 2725

                                
Query: 379  agatccttatcacctagcaa 398
             |||||||||||||||||||
Sbjct: 2724 ggatccttatcacctagcaa 2705
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>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene)
          Length = 2660

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 322  gaggccgagtcaatacccgaaccaccaccattgctctgtgcta 364
            ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct: 2346 gaggctgagtcaatacccgaaccaccgccattgctgtgtgcta 2304
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>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 326   ccgagtcaatacccgaaccaccacc 350
             |||||||||||||||||||||||||
Sbjct: 25596 ccgagtcaatacccgaaccaccacc 25620
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>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds
          Length = 2423

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 326  ccgagtcaatacccgaaccaccaccattgctctgtgctaag 366
            ||||||||||||||||||||||| | ||||  |||||||||
Sbjct: 2277 ccgagtcaatacccgaaccaccagccttgcattgtgctaag 2237
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 292     atggcactggggaaatacagcc 313
               ||||||||||||||||||||||
Sbjct: 3520927 atggcactggggaaatacagcc 3520948
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 292     atggcactggggaaatacagcc 313
               ||||||||||||||||||||||
Sbjct: 2665467 atggcactggggaaatacagcc 2665446
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   aagaaatatctaaaatgcatgg 295
             ||||||||||||||||||||||
Sbjct: 95615 aagaaatatctaaaatgcatgg 95636
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>gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosome 12, complete
             sequence
          Length = 204825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   agagagacgcacaaaacagag 218
             |||||||||||||||||||||
Sbjct: 84515 agagagacgcacaaaacagag 84535
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>gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, complete sequence
          Length = 167103

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    cccagcattcctgagcttcca 167
              |||||||||||||||||||||
Sbjct: 130358 cccagcattcctgagcttcca 130378
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>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete
            sequence
          Length = 201338

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 198  agagagacgcacaaaacagag 218
            |||||||||||||||||||||
Sbjct: 8820 agagagacgcacaaaacagag 8800
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>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene)
          Length = 3580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 329  agtcaatacccgaaccaccac 349
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, complete sequence
          Length = 160732

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    cccagcattcctgagcttcca 167
              |||||||||||||||||||||
Sbjct: 139215 cccagcattcctgagcttcca 139195
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>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 94643

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   ggcactggggaaatacagccg 314
             |||||||||||||||||||||
Sbjct: 19820 ggcactggggaaatacagccg 19800
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>gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, complete sequence
          Length = 177483

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   aacccagcattcctgagcttc 165
             |||||||||||||||||||||
Sbjct: 94469 aacccagcattcctgagcttc 94449
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>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 341   aaccaccaccattgctctgtgctaa 365
             |||||||||||||||| ||||||||
Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
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>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 209   caaaacagaggcaacgagccagccaaaag 237
             ||||||||||||| ||||| |||||||||
Sbjct: 44542 caaaacagaggcaccgagctagccaaaag 44514
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      agtcaatacccgaaccaccac 349
                |||||||||||||||||||||
Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
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>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 209    caaaacagaggcaacgagccagccaaaag 237
              ||||||||||||| ||||| |||||||||
Sbjct: 102359 caaaacagaggcaccgagctagccaaaag 102331
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>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 209    caaaacagaggcaacgagccagccaaaag 237
              ||||||||||||| ||||| |||||||||
Sbjct: 121766 caaaacagaggcaccgagctagccaaaag 121794
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 209     caaaacagaggcaacgagccagccaaaag 237
               ||||||||||||| ||||| |||||||||
Sbjct: 3958563 caaaacagaggcaccgagctagccaaaag 3958591



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 209     caaaacagaggcaacgagccagccaaaag 237
               ||||||||||||| ||||| |||||||||
Sbjct: 2089771 caaaacagaggcaccgagctagccaaaag 2089743
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 329   agtcaatacccgaaccaccac 349
             |||||||||||||||||||||
Sbjct: 45974 agtcaatacccgaaccaccac 45994
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 329    agtcaatacccgaaccaccac 349
              |||||||||||||||||||||
Sbjct: 160347 agtcaatacccgaaccaccac 160367
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>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full
            insert sequence
          Length = 2218

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 329  agtcaatacccgaaccaccac 349
            |||||||||||||||||||||
Sbjct: 2007 agtcaatacccgaaccaccac 1987
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>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence
          Length = 3550

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 329  agtcaatacccgaaccaccac 349
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
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>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor
            AT4G00730 (ANL2) mRNA, complete cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  agtcaatacccgaaccacca 348
            ||||||||||||||||||||
Sbjct: 3018 agtcaatacccgaaccacca 2999
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    acccgaaccaccaccattgc 355
              ||||||||||||||||||||
Sbjct: 490925 acccgaaccaccaccattgc 490906
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>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   cttgaagaaatatctaaaat 289
             ||||||||||||||||||||
Sbjct: 48642 cttgaagaaatatctaaaat 48661
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>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 328  gagtcaatacccgaaccaccaccattgc 355
            ||||||||||||||||||| ||| ||||
Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
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>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209981

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    ttgaagaaatatctaaaatg 290
              ||||||||||||||||||||
Sbjct: 157323 ttgaagaaatatctaaaatg 157304
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>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   ttcctgagcttccacttgcatacc 177
             |||||||||||||||| |||||||
Sbjct: 45022 ttcctgagcttccactggcatacc 44999
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>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
             complete sequence
          Length = 127419

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   aaacagaggcaacgagccagccaa 234
             |||||||| |||||||||||||||
Sbjct: 89979 aaacagagccaacgagccagccaa 89956
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>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    agtcaatacccgaaccacca 348
              ||||||||||||||||||||
Sbjct: 106202 agtcaatacccgaaccacca 106221
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gaaccaccaccattgctctg 359
             ||||||||||||||||||||
Sbjct: 63006 gaaccaccaccattgctctg 63025
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>emb|BX538053.1|HSM806224 Homo sapiens genomic DNA; cDNA DKFZp686L04145 (from clone
            DKFZp686L04145)
          Length = 3770

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   cattgattgcaaaaataaat 38
            ||||||||||||||||||||
Sbjct: 2887 cattgattgcaaaaataaat 2906
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>gb|AC107628.4| Homo sapiens chromosome 8, clone CTD1-2009P10, complete sequence
          Length = 102718

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    cattgattgcaaaaataaat 38
             ||||||||||||||||||||
Sbjct: 43071 cattgattgcaaaaataaat 43090
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>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence
          Length = 2075

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  agtcaatacccgaaccacca 348
            ||||||||||||||||||||
Sbjct: 1938 agtcaatacccgaaccacca 1919
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>gb|AY048575.1| Xenopus laevis Pax6 gene, promoter and 5'UTR
          Length = 2603

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   attgattgcaaaaataaatt 39
            ||||||||||||||||||||
Sbjct: 1488 attgattgcaaaaataaatt 1507
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>gb|AC163744.3| Pan troglodytes BAC clone CH251-376E11 from chromosome unknown, complete
              sequence
          Length = 195342

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     cattgattgcaaaaataaat 38
              ||||||||||||||||||||
Sbjct: 160142 cattgattgcaaaaataaat 160161
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>gb|AC175061.3| Pan troglodytes BAC clone CH251-572M8 from chromosome unknown, complete
             sequence
          Length = 191409

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    cattgattgcaaaaataaat 38
             ||||||||||||||||||||
Sbjct: 46979 cattgattgcaaaaataaat 46960
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>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  agtcaatacccgaaccacca 348
            ||||||||||||||||||||
Sbjct: 2957 agtcaatacccgaaccacca 2938
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>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   agtcaatacccgaaccacca 348
             ||||||||||||||||||||
Sbjct: 87328 agtcaatacccgaaccacca 87347
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>emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in linkage group 18,
             complete sequence
          Length = 117304

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    cagacattatttggcagatagctt 84
             |||||||||||||||| |||||||
Sbjct: 61196 cagacattatttggcatatagctt 61173
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>dbj|AP005367.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB800C8, complete
              sequence
          Length = 112111

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     cattgattgcaaaaataaat 38
              ||||||||||||||||||||
Sbjct: 104560 cattgattgcaaaaataaat 104541
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>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   ccagcattcctgagcttcca 167
             ||||||||||||||||||||
Sbjct: 62548 ccagcattcctgagcttcca 62529
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>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds
          Length = 2953

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  agtcaatacccgaaccacca 348
            ||||||||||||||||||||
Sbjct: 2838 agtcaatacccgaaccacca 2819
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>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 328  gagtcaatacccgaaccaccaccattgc 355
            |||||||||||||||||| |||| ||||
Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771
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>dbj|AP004295.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1907E5
          Length = 154597

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    cattgattgcaaaaataaat 38
             ||||||||||||||||||||
Sbjct: 21892 cattgattgcaaaaataaat 21873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,859,835
Number of Sequences: 3902068
Number of extensions: 3859835
Number of successful extensions: 71463
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71258
Number of HSP's gapped (non-prelim): 201
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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