ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009533.1| Triticum aestivum clone wr1.pk0133.f5:fis, full i... 127 2e-26
2gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com... 40 3.4
3emb|CR847570.9| Zebrafish DNA sequence from clone DKEY-29M9 in l... 40 3.4
4gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 40 3.4
5emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on ch... 40 3.4
6emb|BX769175.12| Zebrafish DNA sequence from clone DKEY-229K5 in... 40 3.4
7dbj|AK155714.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 3.4
8gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, com... 40 3.4
9gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, com... 40 3.4
10emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 40 3.4

>gb|BT009533.1| Triticum aestivum clone wr1.pk0133.f5:fis, full insert mRNA sequence
          Length = 1820

 Score =  127 bits (64), Expect = 2e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                        
Query: 51   ttacaatcctttacagacgagaagggcgacagttttacaccaggcacttgcctccctgta 110
            |||||||||||||||| ||| |||||||||||||| |||||  |||||||||||||||||
Sbjct: 1305 ttacaatcctttacaggcgaaaagggcgacagtttcacaccgagcacttgcctccctgta 1246

                                        
Query: 111  atgctagtctagcacaatggcgagccgc 138
            |||||||||||||||||||| |||||||
Sbjct: 1245 atgctagtctagcacaatggtgagccgc 1218



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 1    gaaacagggcggcataactttattagcaat 30
            ||||||| ||||||| ||||||||||||||
Sbjct: 1369 gaaacagtgcggcatcactttattagcaat 1340



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 151  cacctgcgatctcaaattattctgtagg 178
            |||||||||||| |||||||| ||||||
Sbjct: 1218 cacctgcgatctgaaattattttgtagg 1191



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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    atgttgttattgtttataacagtt 52
             ||||||||||||||||||| ||||
Sbjct: 30924 atgttgttattgtttataatagtt 30947



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>emb|CR847570.9| Zebrafish DNA sequence from clone DKEY-29M9 in linkage group 3,
             complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tgttgttattgtttataaca 49
             ||||||||||||||||||||
Sbjct: 74620 tgttgttattgtttataaca 74639



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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     atgttgttattgtttataacagtt 52
              ||||||||||||||||||| ||||
Sbjct: 193770 atgttgttattgtttataatagtt 193793



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>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part
             of the gene for C-terminal PDZ domain ligand of neuronal
             nitric oxide synthase (CAPON), complete sequence
          Length = 208408

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    tgttgttattgtttataacagtta 53
             |||||||||||||||||| |||||
Sbjct: 15349 tgttgttattgtttataatagtta 15326



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>emb|BX769175.12| Zebrafish DNA sequence from clone DKEY-229K5 in linkage group 3,
             complete sequence
          Length = 154794

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tgttgttattgtttataaca 49
             ||||||||||||||||||||
Sbjct: 44123 tgttgttattgtttataaca 44142



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>dbj|AK155714.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730208F19
           product:unclassifiable, full insert sequence
          Length = 1016

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 29  atgttgttattgtttataacagtt 52
           ||||||||||||||||||| ||||
Sbjct: 715 atgttgttattgtttataatagtt 692



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>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence
          Length = 185255

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    atgttgttattgtttataac 48
             ||||||||||||||||||||
Sbjct: 85341 atgttgttattgtttataac 85360



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>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aatgttgttattgtttataa 47
             ||||||||||||||||||||
Sbjct: 56618 aatgttgttattgtttataa 56599



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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tgttgttattgtttataaca 49
             ||||||||||||||||||||
Sbjct: 81192 tgttgttattgtttataaca 81211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,796,347
Number of Sequences: 3902068
Number of extensions: 1796347
Number of successful extensions: 41505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41488
Number of HSP's gapped (non-prelim): 17
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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