ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl53h11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = -1 Query: 349 FPYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 FPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 832 FPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 57.0 bits (136), Expect = 1e-08 Identities = 26/31 (83%), Positives = 28/31 (90%) Frame = -1 Query: 349 FPYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 836 FPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 55.1 bits (131), Expect = 4e-08 Identities = 24/31 (77%), Positives = 28/31 (90%) Frame = -1 Query: 349 FPYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 833 FPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -1 Query: 349 FPYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 840 FPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 47.4 bits (111), Expect = 9e-06 Identities = 24/31 (77%), Positives = 26/31 (83%), Gaps = 1/31 (3%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 257 PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 847 PYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 37.0 bits (84), Expect = 0.012 Identities = 19/30 (63%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LLYP++ EGLT RGIPNSISI Sbjct: 843 PYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 36.6 bits (83), Expect = 0.016 Identities = 19/30 (63%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+PN+ EGLT RGIPNSISI Sbjct: 843 PYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.2 bits (82), Expect = 0.021 Identities = 19/30 (63%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LLYP++ EGLT RGIPNSISI Sbjct: 830 PYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 36.2 bits (82), Expect = 0.021 Identities = 19/30 (63%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LLYP++ EGLT RGIPNSISI Sbjct: 816 PYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 36.2 bits (82), Expect = 0.021 Identities = 19/30 (63%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LLYP++ EGLT RGIPNSISI Sbjct: 838 PYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 34.3 bits (77), Expect = 0.078 Identities = 18/30 (60%), Positives = 21/30 (70%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+P++ EGLT RGIPNSISI Sbjct: 841 PYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+P + EGLT +GIPNS+SI Sbjct: 836 PYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/30 (60%), Positives = 19/30 (63%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY +L P D EGLT RGIPNSISI Sbjct: 838 PYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/30 (60%), Positives = 20/30 (66%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL P++ EGLT RGIPNSISI Sbjct: 834 PYTLLLPSSK------EGLTFRGIPNSISI 857
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 32.0 bits (71), Expect = 0.39 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = -1 Query: 340 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 176 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 175 VCDTELCRCMDN 140 +C+T CM+N Sbjct: 115 LCETVRGECMEN 126
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 31.6 bits (70), Expect = 0.51 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+P++ G+T RGIPNS+SI Sbjct: 836 PYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 31.2 bits (69), Expect = 0.66 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+P + GLT +GIPNS+SI Sbjct: 837 PYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.66 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -1 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T H EGLT +GIPNSISI Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 31.2 bits (69), Expect = 0.66 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL+P + GLT +GIPNS+SI Sbjct: 838 PYTLLFPTSEG------GLTGKGIPNSVSI 861
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 347 PIHAALPKHLRPHGTGRGAHRQGHPE 270 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 347 PIHAALPKHLRPHGTGRGAHRQGHPE 270 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL P++ G+T RG+PNSISI Sbjct: 895 PYELLAPSSPP------GVTCRGVPNSISI 918
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -1 Query: 184 CVCV-------CDTELCRCMDN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47 C+C C +++ C+ N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -1 Query: 184 CVCV-------CDTELCRCMDN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47 C+C C +++ C+ N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -1 Query: 268 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDTELC-----RCMDN*GNKGACTTGLI 104 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 103 GMRKL 89 G+R L Sbjct: 304 GLRSL 308
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +2 Query: 236 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQH 340 T DVL DG VR G +G+SR+V V EQH Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQH 471
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY LL P + G+T RGIPNSISI Sbjct: 873 PYELLKPFSEP------GVTGRGIPNSISI 896
>PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1302 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 22 HYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTRPYC 135 HYW I S+H+ LTG Q S S+ + C R C Sbjct: 328 HYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1290 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 22 HYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTRPYC 135 HYW I S+H+ LTG Q S S+ + C R C Sbjct: 328 HYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>PLCG1_HUMAN (P19174) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1290 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 22 HYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTRPYC 135 HYW I S+H+ LTG Q S S+ + C R C Sbjct: 328 HYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>PLCG1_BOVIN (P08487) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1291 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 22 HYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTRPYC 135 HYW I S+H+ LTG Q S S+ + C R C Sbjct: 328 HYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.11.30)| (ACTR-IC) (Activin receptor-like kinase 7) (ALK-7) Length = 493 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -1 Query: 238 RRDLMLLCYPCLLTPELACVC-VCDTELCRCMDN*GNKGAC 119 R+ L+LL L+P L CVC +CD+ C +GAC Sbjct: 10 RQALLLLAAAAELSPGLKCVCLLCDSSNFTCQ----TEGAC 46
>CB024_PONPY (Q5R4U5) Protein C2orf24 homolog| Length = 410 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -1 Query: 268 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDTELC-----RCMDN*GNKGACTTGLI 104 ++++ S V + L L C P P+L C E C +C+ + N +C G Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGST 303 Query: 103 GMRKL 89 G+R L Sbjct: 304 GLRSL 308
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 346 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 257 PY L+ P++ G+T RG+PNS++I Sbjct: 876 PYELMAPSSGP------GITCRGVPNSVTI 899
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -3 Query: 290 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 204 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,068,187 Number of Sequences: 219361 Number of extensions: 945318 Number of successful extensions: 2478 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2471 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
