Clone Name | rbastl53h11 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 311 bits (157), Expect = 8e-82 Identities = 163/165 (98%) Strand = Plus / Minus Query: 185 agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 244 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 245 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608 Query: 305 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaa 2563 Score = 246 bits (124), Expect = 4e-62 Identities = 143/149 (95%), Gaps = 4/149 (2%) Strand = Plus / Minus Query: 20 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 80 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcgccc----ttattgc 135 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 136 cttaattatccatgcaccggcacaactct 164 ||||||||| ||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaactct 2748
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 143 bits (72), Expect = 4e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtg 847 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||||||||||||||| ||||| Sbjct: 846 gtcggaggtgttggggtagagcagcatgtaggggaa 811 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 13 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 62 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 95 ccgcatgccgatcagacccgtcgtgcac 122 ||||||||||||| |||||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcac 1018
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 9e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||||||||||| |||||||| |||||||||||||||| ||| || | || | ||| | Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30026393 Query: 311 gtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 | |||||||||||||||||||||||||| |||| ||||| Sbjct: 30026392 gaggtcggaggtgtttgggtagagcagcgtgtaggggaa 30026354 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27821686 tcagatggagatgctgttggggatgcccatggcggtgagccc 27821645 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||| ||||||||||||||||| Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatgggaa 27803012
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 85.7 bits (43), Expect = 9e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||||||||||| |||||||| |||||||||||||||| ||| || | || | ||| | Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2639 Query: 311 gtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 | |||||||||||||||||||||||||| |||| ||||| Sbjct: 2638 gaggtcggaggtgtttgggtagagcagcgtgtaggggaa 2600
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 85.7 bits (43), Expect = 9e-14 Identities = 85/99 (85%) Strand = Plus / Plus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||||||||||| |||||||| |||||||||||||||| ||| || | || | ||| | Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 81358 Query: 311 gtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 | |||||||||||||||||||||||||| |||| ||||| Sbjct: 81359 gaggtcggaggtgtttgggtagagcagcgtgtaggggaa 81397
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 9e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||||||||||| |||||||| |||||||||||||||| ||| || | || | ||| | Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30117815 Query: 311 gtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 | |||||||||||||||||||||||||| |||| ||||| Sbjct: 30117814 gaggtcggaggtgtttgggtagagcagcgtgtaggggaa 30117776 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27913010 tcagatggagatgctgttggggatgcccatggcggtgagccc 27912969 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||| ||||||||||||||||| Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatgggaa 27894336
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 85.7 bits (43), Expect = 9e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||||||||||| |||||||| |||||||||||||||| ||| || | || | ||| | Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2672 Query: 311 gtggtcggaggtgtttgggtagagcagcatgtatgggaa 349 | |||||||||||||||||||||||||| |||| ||||| Sbjct: 2671 gaggtcggaggtgtttgggtagagcagcgtgtaggggaa 2633
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 79.8 bits (40), Expect = 5e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| |||||||||||||||| ||| || | || | ||| || | Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgag 2554 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||||||||||||||||||||||||| |||| ||||| Sbjct: 2553 gtcggaggtgtttgggtagagcagcgtgtaggggaa 2518
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 73.8 bits (37), Expect = 3e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 251 agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 310 |||| ||||||| |||||||| ||||||||| ||||||| ||||| | || ||| | Sbjct: 2660 agattagatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgccctt 2601 Query: 311 gtggtcggaggtgtttgggtagagcagcatgta 343 ||||||||||||||| ||||||||||||||||| Sbjct: 2600 gtggtcggaggtgttggggtagagcagcatgta 2568
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 256 agatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggt 315 ||||||| |||||||| ||||||||| ||||||| ||||| | || ||| |||||| Sbjct: 1084 agatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggt 1025 Query: 316 cggaggtgtttgggtagagcagcatgta 343 |||||||||| ||||||||||||||||| Sbjct: 1024 cggaggtgttggggtagagcagcatgta 997
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| ||||||||| | ||||||||||| |||| ||| |||| Sbjct: 753 tcagatggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtg 694 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||||||||||| |||||||||| |||||| ||||| Sbjct: 693 atcggaggtgttggggtagagcaacatgtaggggaa 658
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| ||||||||| |||| |||||||| |||| || |||| Sbjct: 2064 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 2005 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||| |||||||| ||||||||||||||||| ||||| Sbjct: 2004 gtcagaggtgttggggtagagcagcatgtaggggaa 1969
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| ||||||||| |||| |||||||| |||| || |||| Sbjct: 4662 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 4603 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||| |||||||| || |||||||||||||| ||||| Sbjct: 4602 gtcagaggtgttgggatagagcagcatgtaggggaa 4567
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313 ||||||||| |||||||| ||||||||| |||| |||||||| |||| || |||| Sbjct: 2595 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 2536 Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 ||| |||||||| || |||||||||||||| ||||| Sbjct: 2535 gtcagaggtgttgggatagagcagcatgtaggggaa 2500
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 246 tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 296 ||||||| ||||||||| | |||||| ||||||||| |||||||||||||| Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2446 tcagatggagatgctgttggggatgcccatggcggtgagccc 2405
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2925 tcagatggagatgctgttggggatgcccatggcggtgagccc 2884
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 65816 tcagatggagatgctgttggggatgcccatggcggtgagccc 65775 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||| ||||||||||||||||| Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatgggaa 47142
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2919 tcagatggagatgctgttggggatgcccatggcggtgagccc 2878
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1332 tcagatggagatgctgttggggatgcccatggcggtgagccc 1291
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2597 tcagatggagatgctgttggggatgcccatggcggtgagccc 2556
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2927 tcagatggagatgctgttggggatgcccatggcggtgagccc 2886
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295 ||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1497 tcagatggagatgctgttggggatgcccatggcggtgagccc 1456
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 264 atgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcggaggtg 323 |||||||| ||||||||| |||||||||| || |||| ||| ||||||| ||||| Sbjct: 1 atgctgttggggatgcccttggcggtgaggccggcggcggcacccttgtggtcttaggtg 60 Query: 324 tttgggtagagcagcatgtatggga 348 || ||||||||||||||||| |||| Sbjct: 61 ttagggtagagcagcatgtagggga 85
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||| ||||||||||||||||| Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatgggaa 2506
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| ||||| ||||||||||||||||| Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatgggaa 10881
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaa 701
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaa 696
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 48.1 bits (24), Expect = 0.019 Identities = 33/36 (91%) Strand = Plus / Minus Query: 314 gtcggaggtgtttgggtagagcagcatgtatgggaa 349 |||||||||||| |||||||||||| |||| ||||| Sbjct: 2562 gtcggaggtgttggggtagagcagcgtgtaggggaa 2527
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 252 gatcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| |||||||| ||||||||| |||| |||| Sbjct: 1558 gatcagatggagatgctgttggggatgcccttggctgtga 1519
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 2978 atcagatggatgtgctgttggggatgcccatgccggtga 2940
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 25242576 atcagatggatgtgctgttggggatgcccatgccggtga 25242538 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Plus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 25209453 atcagatggatgtgctgttggggatgcccatgccggtga 25209491
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 107699 atcagatggatgtgctgttggggatgcccatgccggtga 107661 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Plus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 74576 atcagatggatgtgctgttggggatgcccatgccggtga 74614
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 17761 atcagatggatgtgctgttggggatgcccatgccggtga 17723
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 2976 atcagatggatgtgctgttggggatgcccatgccggtga 2938
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 2053 atcagatggatgtgctgttggggatgcccatgccggtga 2015
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 2461 atcagatggatgtgctgttggggatgcccatgccggtga 2423
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 46.1 bits (23), Expect = 0.075 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 atcagatggatatgctgttcgggatgcccctggcggtga 291 ||||||||||| ||||||| ||||||||| || |||||| Sbjct: 2891 atcagatggatgtgctgttggggatgcccatgccggtga 2853
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccct 283 ||||||||| |||||||| ||||||||||| Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 254 tcagatggatatgctgttcgggatgcccct 283 ||||||||| |||||||| ||||||||||| Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 254 tcagatggatatgctgttcgggatgcccct 283 ||||||||| |||||||| ||||||||||| Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccct 283 ||||||||| |||||||| ||||||||||| Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 254 tcagatggatatgctgttcgggatgcccct 283 ||||||||| |||||||| ||||||||||| Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 44.1 bits (22), Expect = 0.30 Identities = 37/42 (88%) Strand = Plus / Minus Query: 258 atggatatgctgttcgggatgcccctggcggtgagcccctcg 299 ||||| |||||||| || |||||| |||| |||||||||||| Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 44.1 bits (22), Expect = 0.30 Identities = 40/46 (86%) Strand = Plus / Minus Query: 258 atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 303 ||||| |||||||| || |||||| |||| || ||||||||||||| Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaacaagggattttttctgca 54 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggattttttct 51 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 gatcagatggatatgctgttcgggatgcccct 283 ||||||||||| |||||| | ||||||||||| Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 252 gatcagatggatatgctgttcgggatgcccct 283 ||||||||||| |||||| | ||||||||||| Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,034,911 Number of Sequences: 3902068 Number of extensions: 2034911 Number of successful extensions: 36541 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36339 Number of HSP's gapped (non-prelim): 200 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)