ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 28 6.9
2SKEL_DROME (Q9GPJ1) Protein skeletor 28 6.9
3GRT1_SCHPO (Q9C469) Zinc finger protein grt1 28 6.9

>ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 41  VRLASNTPPTQLYSSPSLFLTHTHTK 118
           + L    PPT+L+SS  ++LTH + K
Sbjct: 146 IDLVDGIPPTKLHSSYGIYLTHCNQK 171



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>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 56  NTPPTQLYSSPSLFL--THTHTKHTSPPA 136
           N  PT++ S P + L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119



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>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 150 RWAKCAGGDVCFVC 109
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,950,646
Number of Sequences: 219361
Number of extensions: 358674
Number of successful extensions: 1106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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