ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
2dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
3dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
4emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 ... 44 0.31
5gb|AC099009.2| Drosophila melanogaster clone BACR17M11, complete... 42 1.2
6ref|XM_595992.2| PREDICTED: Bos taurus similar to Receptor-type ... 42 1.2
7emb|CR956613.2|RP43043M20 Pan troglodytes chromosome X BAC RP43-... 42 1.2
8gb|AF406703.1| Solanum tuberosum BEL1-related homeotic protein 3... 42 1.2
9emb|AL109932.15|HSDJ770C6 Human DNA sequence from clone RP4-770C... 42 1.2
10emb|AL109609.5|HSJ556A22 Human DNA sequence from clone RP4-556A2... 42 1.2
11emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, co... 42 1.2
12emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC... 42 1.2
13emb|BX537827.1|HSM805921 Homo sapiens genomic DNA; cDNA DKFZp686... 42 1.2
14gb|AC100852.2| Homo sapiens chromosome 17, clone RP11-125C16, co... 42 1.2
15tpg|BK003690.1| TPA: TPA_inf: Drosophila melanogaster HDC05448 (... 42 1.2
16gb|AC006472.2|AC006472 Drosophila melanogaster, chromosome 2R, r... 42 1.2
17dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 42 1.2
18gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18... 42 1.2
19gb|AC005894.1|AC005894 Drosophila melanogaster, chromosome 2R, r... 42 1.2
20gb|DQ316259.1| Homo sapiens nemo like kinase (NLK) gene, complet... 42 1.2
21gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com... 40 4.8
22gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21... 40 4.8
23gb|AC122283.3| Mus musculus BAC clone RP23-242G6 from chromosome... 40 4.8
24gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome ... 40 4.8
25gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Ca... 40 4.8
26gb|AC125521.4| Mus musculus BAC clone RP24-290D7 from chromosome... 40 4.8
27gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, com... 40 4.8
28gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 40 4.8
29gb|AC183612.3| Pan troglodytes BAC clone CH251-194C16 from chrom... 40 4.8
30gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 4.8
31emb|AL358112.20| Human DNA sequence from clone RP11-311B1 on chr... 40 4.8
32emb|AL162614.25| Human DNA sequence from clone RP1-220G17 on chr... 40 4.8
33gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, comp... 40 4.8
34emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 o... 40 4.8
35emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chr... 40 4.8
36emb|CR848813.6| Zebrafish DNA sequence from clone DKEY-260J20 in... 40 4.8
37gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, co... 40 4.8
38gb|AC090137.4| Homo sapiens chromosome 8, clone RP11-56A10, comp... 40 4.8
39gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, comp... 40 4.8
40emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 i... 40 4.8
41gb|AC154824.2| Mus musculus BAC clone RP24-540A17 from chromosom... 40 4.8
42gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map... 40 4.8
43gb|AC019170.7| Homo sapiens BAC clone RP11-162G9 from 4, complet... 40 4.8
44gb|AC012670.7| Homo sapiens BAC clone RP11-514A9 from 2, complet... 40 4.8
45gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome... 40 4.8
46gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Hu... 40 4.8
47dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03... 40 4.8
48emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chr... 40 4.8
49gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19... 40 4.8
50emb|CT010447.23| Mouse DNA sequence from clone RP23-15K11 on chr... 40 4.8
51dbj|AP000336.2| Homo sapiens genomic DNA, chromosome 21 clone:CM... 40 4.8
52dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.8
53dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 4.8
54gb|AC004061.1|AC004061 Homo sapiens chromosome 4 clone B299F15 m... 40 4.8
55gb|AC002037.1|AC002037 Human Chromosome 11 Overlapping Cosmids c... 40 4.8
56gb|AC096784.17| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.8
57dbj|AP000215.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter... 40 4.8 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                           
Query: 154     gcaggggagagcaaaatctgcacagggacgagtctacccaaatccttag--tttacacca 211
               |||||||||| |||||||||||||||     |||||| ||||||||||   ||| |||||
Sbjct: 9082615 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 9082560

                                                                           
Query: 212     aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 266
               ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 9082559 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 9082501

                                                   
Query: 267     ctggtaatacctacttagcctcagcgttgttatggc 302
                || ||  |||||||| || ||||| ||||||||||
Sbjct: 9082500 atgctaggacctacttcgcatcagccttgttatggc 9082465



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 67      ttatctctatgtacaaatcccaca 90
               |||||| |||||||||||||||||
Sbjct: 9082715 ttatctttatgtacaaatcccaca 9082692
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                          
Query: 154    gcaggggagagcaaaatctgcacagggacgagtctacccaaatccttag--tttacacca 211
              |||||||||| |||||||||||||||     |||||| ||||||||||   ||| |||||
Sbjct: 111622 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 111567

                                                                          
Query: 212    aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 266
              ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 111566 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 111508

                                                  
Query: 267    ctggtaatacctacttagcctcagcgttgttatggc 302
               || ||  |||||||| || ||||| ||||||||||
Sbjct: 111507 atgctaggacctacttcgcatcagccttgttatggc 111472



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     ttatctctatgtacaaatcccaca 90
              |||||| |||||||||||||||||
Sbjct: 111722 ttatctttatgtacaaatcccaca 111699
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>dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070C16, full
            insert sequence
          Length = 3448

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcaggggagagcaaaatctgcacagggacgagtctacccaaatccttag--tttacacca 211
            |||||||||| |||||||||||||||     |||||| ||||||||||   ||| |||||
Sbjct: 3269 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 3214

                                                                        
Query: 212  aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 266
            ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 3213 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 3155

                                                
Query: 267  ctggtaatacctacttagcctcagcgttgttatggc 302
             || ||  |||||||| || ||||| ||||||||||
Sbjct: 3154 atgctaggacctacttcgcatcagccttgttatggc 3119



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   ttatctctatgtacaaatcccaca 90
            |||||| |||||||||||||||||
Sbjct: 3369 ttatctttatgtacaaatcccaca 3346
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>emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 in linkage group 24,
             complete sequence
          Length = 168886

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    aataaaggcaattattttatct 72
             ||||||||||||||||||||||
Sbjct: 90667 aataaaggcaattattttatct 90688
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>gb|AC099009.2| Drosophila melanogaster clone BACR17M11, complete sequence
          Length = 188872

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   ctcttgctgctactaccgacg 337
             |||||||||||||||||||||
Sbjct: 32938 ctcttgctgctactaccgacg 32918
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>ref|XM_595992.2| PREDICTED: Bos taurus similar to Receptor-type tyrosine-protein
           phosphatase T precursor (R-PTP-T) (RPTP-rho)
           (LOC517815), mRNA
          Length = 1560

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 aggatcgccaccaaaatttca 261
           |||||||||||||||||||||
Sbjct: 205 aggatcgccaccaaaatttca 225
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>emb|CR956613.2|RP43043M20 Pan troglodytes chromosome X BAC RP43-043M20, complete sequence
          Length = 81986

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ttaataaaggcaattatttta 69
             |||||||||||||||||||||
Sbjct: 37576 ttaataaaggcaattatttta 37596
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>gb|AF406703.1| Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA,
            complete cds
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   accatgaagctgatgtagaaa 116
            |||||||||||||||||||||
Sbjct: 1579 accatgaagctgatgtagaaa 1599
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>emb|AL109932.15|HSDJ770C6 Human DNA sequence from clone RP4-770C6 on chromosome 1, complete
             sequence
          Length = 99340

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    acatcattatgtctttttaac 32
             |||||||||||||||||||||
Sbjct: 46542 acatcattatgtctttttaac 46522
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>emb|AL109609.5|HSJ556A22 Human DNA sequence from clone RP4-556A22 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 109098

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    ttaataaaggcaattatttta 69
             |||||||||||||||||||||
Sbjct: 46685 ttaataaaggcaattatttta 46665
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>emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, complete sequence
          Length = 177966

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    tgatgtagaaaaagaagagaa 126
              |||||||||||||||||||||
Sbjct: 115760 tgatgtagaaaaagaagagaa 115780
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>emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4
          Length = 108158

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttatgtctttttaactctata 38
             |||||||||||||||||||||
Sbjct: 51015 ttatgtctttttaactctata 50995
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>emb|BX537827.1|HSM805921 Homo sapiens genomic DNA; cDNA DKFZp686O13239 (from clone
           DKFZp686O13239)
          Length = 2517

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 12  acatcattatgtctttttaac 32
           |||||||||||||||||||||
Sbjct: 760 acatcattatgtctttttaac 780
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>gb|AC100852.2| Homo sapiens chromosome 17, clone RP11-125C16, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 60    aattattttatctctatgtac 80
             |||||||||||||||||||||
Sbjct: 20999 aattattttatctctatgtac 21019
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>tpg|BK003690.1| TPA: TPA_inf: Drosophila melanogaster HDC05448 (HDC05448) gene,
           complete cds
          Length = 1597

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 317 ctcttgctgctactaccgacg 337
           |||||||||||||||||||||
Sbjct: 62  ctcttgctgctactaccgacg 42
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>gb|AC006472.2|AC006472 Drosophila melanogaster, chromosome 2R, region 45E1-46A2, BAC clone
             BACR48G21, complete sequence
          Length = 156346

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 317   ctcttgctgctactaccgacg 337
             |||||||||||||||||||||
Sbjct: 11715 ctcttgctgctactaccgacg 11735
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 11      aacatcattatgtctttttaa 31
               |||||||||||||||||||||
Sbjct: 1572540 aacatcattatgtctttttaa 1572560
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>gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18 of 73 of the complete
             sequence
          Length = 242171

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   ctcttgctgctactaccgacg 337
             |||||||||||||||||||||
Sbjct: 31695 ctcttgctgctactaccgacg 31675
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>gb|AC005894.1|AC005894 Drosophila melanogaster, chromosome 2R, region 46A1-46B2, P1 clones
             DS00050, DS00191, and DS05369, complete sequence
          Length = 196337

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   ctcttgctgctactaccgacg 337
             |||||||||||||||||||||
Sbjct: 28361 ctcttgctgctactaccgacg 28341
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>gb|DQ316259.1| Homo sapiens nemo like kinase (NLK) gene, complete cds
          Length = 158034

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 60    aattattttatctctatgtac 80
             |||||||||||||||||||||
Sbjct: 14690 aattattttatctctatgtac 14710
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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aattattttatctctatgta 79
             ||||||||||||||||||||
Sbjct: 34285 aattattttatctctatgta 34304
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>gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21L17, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aaaagaagagaaaatattcc 134
             ||||||||||||||||||||
Sbjct: 39412 aaaagaagagaaaatattcc 39431
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>gb|AC122283.3| Mus musculus BAC clone RP23-242G6 from chromosome 10, complete sequence
          Length = 184346

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   atgtagaaaaagaagagaaa 127
             ||||||||||||||||||||
Sbjct: 63153 atgtagaaaaagaagagaaa 63172
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>gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome 16, complete sequence
          Length = 179186

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 114    aaaaagaagagaaaatattcctggacag 141
              ||||||||||| || |||||||||||||
Sbjct: 110959 aaaaagaagaggaattattcctggacag 110986
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>gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 156390

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    agaaaaagaagagaaaatat 131
              ||||||||||||||||||||
Sbjct: 146376 agaaaaagaagagaaaatat 146395
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>gb|AC125521.4| Mus musculus BAC clone RP24-290D7 from chromosome 15, complete sequence
          Length = 185147

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 18131 tagaaaaagaagagaaaata 18112
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>gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, complete sequence
          Length = 207159

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    atagtttggctatttaataa 55
             ||||||||||||||||||||
Sbjct: 63981 atagtttggctatttaataa 63962
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     aattattttatctctatgta 79
              ||||||||||||||||||||
Sbjct: 197131 aattattttatctctatgta 197150
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>gb|AC183612.3| Pan troglodytes BAC clone CH251-194C16 from chromosome 12, complete
             sequence
          Length = 135756

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 45382 tagaaaaagaagagaaaata 45401
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 111     tagaaaaagaagagaaaata 130
               ||||||||||||||||||||
Sbjct: 2373609 tagaaaaagaagagaaaata 2373590
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>emb|AL358112.20| Human DNA sequence from clone RP11-311B1 on chromosome 6, complete
             sequence
          Length = 91161

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 61578 tagaaaaagaagagaaaata 61597
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>emb|AL162614.25| Human DNA sequence from clone RP1-220G17 on chromosome 11p12-14.1,
             complete sequence
          Length = 93100

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   gaaaaagaagagaaaatatt 132
             ||||||||||||||||||||
Sbjct: 72886 gaaaaagaagagaaaatatt 72867
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>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence
          Length = 197019

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agaaaaagaagagaaaatat 131
             ||||||||||||||||||||
Sbjct: 48022 agaaaaagaagagaaaatat 48003
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>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the
             3' end of a variant of the gene for expressed in
             hematopoietic cells (heart, liver) (HLL), complete
             sequence
          Length = 100496

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 49010 tagaaaaagaagagaaaata 48991
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>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 175724

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   gtagaaaaagaagagaaaat 129
             ||||||||||||||||||||
Sbjct: 17387 gtagaaaaagaagagaaaat 17368
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>emb|CR848813.6| Zebrafish DNA sequence from clone DKEY-260J20 in linkage group 5,
              complete sequence
          Length = 206722

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 108    atgtagaaaaagaagagaaaatattcct 135
              ||||||||||||| ||| ||||||||||
Sbjct: 180252 atgtagaaaaagaggaggaaatattcct 180225
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>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence
          Length = 205753

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ggagagcaaaatctgcacag 178
             ||||||||||||||||||||
Sbjct: 30725 ggagagcaaaatctgcacag 30744
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>gb|AC090137.4| Homo sapiens chromosome 8, clone RP11-56A10, complete sequence
          Length = 169989

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      atgaaaacatcattatgtcttttt 29
              |||||||||||||||||| |||||
Sbjct: 150627 atgaaaacatcattatgtattttt 150650
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>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence
          Length = 203773

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    agaaaaagaagagaaaatat 131
              ||||||||||||||||||||
Sbjct: 121064 agaaaaagaagagaaaatat 121045
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>emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 in linkage group 10,
              complete sequence
          Length = 168142

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    tttacaccaaacaaaaacgt 222
              ||||||||||||||||||||
Sbjct: 135746 tttacaccaaacaaaaacgt 135727
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>gb|AC154824.2| Mus musculus BAC clone RP24-540A17 from chromosome 13, complete
             sequence
          Length = 164494

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaaacatcattatgtctttt 28
             ||||||||||||||||||||
Sbjct: 45857 aaaacatcattatgtctttt 45838
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>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete
             sequence
          Length = 188963

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aaaagaagagaaaatattcc 134
             ||||||||||||||||||||
Sbjct: 33004 aaaagaagagaaaatattcc 33023
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>gb|AC019170.7| Homo sapiens BAC clone RP11-162G9 from 4, complete sequence
          Length = 185281

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 112  agaaaaagaagagaaaatattcct 135
            |||||||||| |||||||||||||
Sbjct: 4249 agaaaaagaaaagaaaatattcct 4272
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>gb|AC012670.7| Homo sapiens BAC clone RP11-514A9 from 2, complete sequence
          Length = 194725

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agaaaaagaagagaaaatat 131
             ||||||||||||||||||||
Sbjct: 66206 agaaaaagaagagaaaatat 66187
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>gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome 10, complete
            sequence
          Length = 233783

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  atgtagaaaaagaagagaaa 127
            ||||||||||||||||||||
Sbjct: 5068 atgtagaaaaagaagagaaa 5049
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>gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Human Bac Library)
             complete sequence
          Length = 113762

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 78926 tagaaaaagaagagaaaata 78945
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>dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03, map 22, complete
              sequences
          Length = 182350

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tagaaaaagaagagaaaata 130
              ||||||||||||||||||||
Sbjct: 129025 tagaaaaagaagagaaaata 129006
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>emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chromosome X, complete
             sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttatctctatgtacaaatcc 86
             ||||||||||||||||||||
Sbjct: 11358 ttatctctatgtacaaatcc 11339
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>gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 154685

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tagaaaaagaagagaaaata 130
              ||||||||||||||||||||
Sbjct: 109304 tagaaaaagaagagaaaata 109285
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>emb|CT010447.23| Mouse DNA sequence from clone RP23-15K11 on chromosome 13, complete
             sequence
          Length = 239180

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aaaacatcattatgtctttt 28
             ||||||||||||||||||||
Sbjct: 13883 aaaacatcattatgtctttt 13902
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>dbj|AP000336.2| Homo sapiens genomic DNA, chromosome 21 clone:CMP21-S588, complete
            sequence
          Length = 37459

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  tagaaaaagaagagaaaata 130
            ||||||||||||||||||||
Sbjct: 1187 tagaaaaagaagagaaaata 1168
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>dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, section 104/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 86663 tagaaaaagaagagaaaata 86644
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>dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-87O6, complete
             sequence
          Length = 177334

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aaaagaagagaaaatattcc 134
             ||||||||||||||||||||
Sbjct: 36382 aaaagaagagaaaatattcc 36401
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>gb|AC004061.1|AC004061 Homo sapiens chromosome 4 clone B299F15 map 4q21, complete sequence
          Length = 117101

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tgatgtagaaaaagaagaga 125
             ||||||||||||||||||||
Sbjct: 85446 tgatgtagaaaaagaagaga 85427
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>gb|AC002037.1|AC002037 Human Chromosome 11 Overlapping Cosmids cSRL72g7 and cSRL140b8,
             complete sequence
          Length = 53897

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaaagaagagaaaatattcc 134
             ||||||||||||||||||||
Sbjct: 10204 aaaagaagagaaaatattcc 10185
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>gb|AC096784.17| Mus musculus strain C57BL/6J chromosome 10 clone rp23-232l11, complete
              sequence
          Length = 202124

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    gtagaaaaagaagagaaaatattc 133
              ||||||||||||||||||| ||||
Sbjct: 153832 gtagaaaaagaagagaaaaaattc 153855
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>dbj|AP000215.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter, Ter region, clone
             f27E1-T1136, segment 1/4, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tagaaaaagaagagaaaata 130
             ||||||||||||||||||||
Sbjct: 27204 tagaaaaagaagagaaaata 27185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,216,228
Number of Sequences: 3902068
Number of extensions: 5216228
Number of successful extensions: 122922
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122711
Number of HSP's gapped (non-prelim): 205
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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