ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC093895.3| Homo sapiens BAC clone RP11-716M23 from 4, comple... 44 0.25
2gb|AC093906.3| Homo sapiens BAC clone RP11-742B18 from 4, comple... 44 0.25
3ref|XM_323301.1| Neurospora crassa OR74A predicted protein (NCU0... 42 0.99
4ref|XM_951475.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.99
5gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome... 42 0.99
6emb|BX119927.6| Human DNA sequence from clone RP11-85I13 on chro... 42 0.99
7emb|AL732371.4| Human DNA sequence from clone RP11-2K15 on chrom... 42 0.99
8emb|AL512590.2| Human DNA sequence from clone RP11-23J9 on chrom... 42 0.99
9gb|AC012322.8| Homo sapiens chromosome 16 clone RP11-562N11, com... 42 0.99
10gb|AC009109.9| Homo sapiens chromosome 16 clone RP11-467L24, com... 42 0.99
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
12dbj|BS000058.1| Pan troglodytes chromosome 22 clone:CH251-361G18... 42 0.99
13dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
14dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.99
15gb|AC121355.9| Mus musculus chromosome 15, clone RP24-434C10, co... 42 0.99
16dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 0.99
17gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, com... 40 3.9
18gb|AC149230.2| Pan troglodytes BAC clone CH251-557H16 from 7, co... 40 3.9
19ref|XM_419285.1| PREDICTED: Gallus gallus similar to hypothetica... 40 3.9
20gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 40 3.9
21gb|AC004967.3| Homo sapiens PAC clone RP5-1111F22 from 7, comple... 40 3.9
22gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, comp... 40 3.9
23gb|AC119618.4| Homo sapiens X BAC RP11-430A19 (Roswell Park Canc... 40 3.9
24emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chr... 40 3.9
25gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, comple... 40 3.9
26gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 3.9
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
28gb|AC090111.1|AC090111 Homo sapiens chromosome 21 clone unknown,... 40 3.9
29gb|AC026776.4|AC026776 Homo sapiens chromosome 21 clone CTC-304G... 40 3.9
30dbj|AP000031.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 3.9
31dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22,... 40 3.9
32dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13,... 40 3.9
33gb|AY111604.1| Zea mays CL11280_1 mRNA sequence 40 3.9
34emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3... 40 3.9
35gb|AC154135.3| Tribolium castaneum BAC T.cast_C40D19 (Clemson U... 40 3.9
36dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.9
37gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
38emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.9
39gb|AY210783.2| Nodularia spumigena strain NSOR10 putative heat t... 40 3.9
40gb|AC171737.2| Monodelphis domestica clone VMRC6-60O3 map human ... 40 3.9
41dbj|AP000254.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 3.9
42dbj|AP000213.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 3.9 
>gb|AC093895.3| Homo sapiens BAC clone RP11-716M23 from 4, complete sequence
          Length = 171135

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 22   catgatgagcaagtaaaattta 43
            ||||||||||||||||||||||
Sbjct: 8703 catgatgagcaagtaaaattta 8682
to top
>gb|AC093906.3| Homo sapiens BAC clone RP11-742B18 from 4, complete sequence
          Length = 189286

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     catgatgagcaagtaaaattta 43
              ||||||||||||||||||||||
Sbjct: 120350 catgatgagcaagtaaaattta 120329
to top
>ref|XM_323301.1| Neurospora crassa OR74A predicted protein (NCU03983.1) partial mRNA
          Length = 768

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 49  aagaagaagaaatcaacaaag 69
           |||||||||||||||||||||
Sbjct: 634 aagaagaagaaatcaacaaag 654
to top
>ref|XM_951475.1| Neurospora crassa OR74A hypothetical protein (NCU03983.1) partial
           mRNA
          Length = 768

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 49  aagaagaagaaatcaacaaag 69
           |||||||||||||||||||||
Sbjct: 634 aagaagaagaaatcaacaaag 654
to top
>gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome 15, complete sequence
          Length = 175584

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 226    taatataaactccagaaagac 246
              |||||||||||||||||||||
Sbjct: 170843 taatataaactccagaaagac 170823
to top
>emb|BX119927.6| Human DNA sequence from clone RP11-85I13 on chromosome X, complete
             sequence
          Length = 37492

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    gaagaagaaatcaacaaagta 71
             |||||||||||||||||||||
Sbjct: 28447 gaagaagaaatcaacaaagta 28467
to top
>emb|AL732371.4| Human DNA sequence from clone RP11-2K15 on chromosome X Contains the 5'
              end of the REPS2 gene for RALBP1 associated Eps domain
              containing 2 and a chromobox homolog 5 (HP1 alpha homolog,
              Drosophila) (CBX5) pseudogene, complete sequence
          Length = 185152

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    gggacaaactgaagtctgaga 143
              |||||||||||||||||||||
Sbjct: 112547 gggacaaactgaagtctgaga 112567
to top
>emb|AL512590.2| Human DNA sequence from clone RP11-23J9 on chromosome 9 Contains the 3'
              end of the gene for KIAA1529 protein, the 5' end of a gene
              for tudor repeat associator with PCTAIRE 2 (PCTAIRE2BP), a
              pseudogene similar to part of ral guanine nucleotide
              dissociation stimulator (RALGDS) and two CpG islands,
              complete sequence
          Length = 165432

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    taaactccagaaagaccccca 251
              |||||||||||||||||||||
Sbjct: 126611 taaactccagaaagaccccca 126631
to top
>gb|AC012322.8| Homo sapiens chromosome 16 clone RP11-562N11, complete sequence
          Length = 186151

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    tccaaacaaaaagtgatgatg 123
              |||||||||||||||||||||
Sbjct: 150819 tccaaacaaaaagtgatgatg 150839
to top
>gb|AC009109.9| Homo sapiens chromosome 16 clone RP11-467L24, complete sequence
          Length = 150086

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   tccaaacaaaaagtgatgatg 123
             |||||||||||||||||||||
Sbjct: 70804 tccaaacaaaaagtgatgatg 70824
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 134      aagtctgagacatcatcagtg 154
                |||||||||||||||||||||
Sbjct: 21087199 aagtctgagacatcatcagtg 21087179
to top
>dbj|BS000058.1| Pan troglodytes chromosome 22 clone:CH251-361G18, map 22, complete
             sequences
          Length = 23730

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 37    aaatttagtgttaagaagaagaaat 61
             |||| ||||||||||||||||||||
Sbjct: 15453 aaatgtagtgttaagaagaagaaat 15429
to top
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0413H11
          Length = 147655

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   aagtctgagacatcatcagtg 154
             |||||||||||||||||||||
Sbjct: 58409 aagtctgagacatcatcagtg 58389
to top
>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 37    aaatttagtgttaagaagaagaaat 61
             |||| ||||||||||||||||||||
Sbjct: 52816 aaatgtagtgttaagaagaagaaat 52792
to top
>gb|AC121355.9| Mus musculus chromosome 15, clone RP24-434C10, complete sequence
          Length = 124054

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   taatataaactccagaaagac 246
             |||||||||||||||||||||
Sbjct: 73832 taatataaactccagaaagac 73852
to top
>dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B732H1,
              LL56-APP region, complete sequence
          Length = 204699

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 37     aaatttagtgttaagaagaagaaat 61
              |||| ||||||||||||||||||||
Sbjct: 136236 aaatgtagtgttaagaagaagaaat 136212
to top
>gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, complete sequence
          Length = 169573

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    agaagaagaaatcaacaaag 69
             ||||||||||||||||||||
Sbjct: 79063 agaagaagaaatcaacaaag 79082
to top
>gb|AC149230.2| Pan troglodytes BAC clone CH251-557H16 from 7, complete sequence
          Length = 157879

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    tagtgttaagaagaagaaat 61
             ||||||||||||||||||||
Sbjct: 75102 tagtgttaagaagaagaaat 75121
to top
>ref|XM_419285.1| PREDICTED: Gallus gallus similar to hypothetical protein LOC55580
            (LOC421210), mRNA
          Length = 5456

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 36   aaaatttagtgttaagaagaagaa 59
            ||||||||| ||||||||||||||
Sbjct: 2476 aaaatttagagttaagaagaagaa 2499
to top
>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   attccaaacaaaaagtgatg 120
             ||||||||||||||||||||
Sbjct: 12528 attccaaacaaaaagtgatg 12547
to top
>gb|AC004967.3| Homo sapiens PAC clone RP5-1111F22 from 7, complete sequence
          Length = 138107

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tagtgttaagaagaagaaat 61
              ||||||||||||||||||||
Sbjct: 105259 tagtgttaagaagaagaaat 105278
to top
>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence
          Length = 188643

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ctgagacatcatcagtgcgg 157
             ||||||||||||||||||||
Sbjct: 14505 ctgagacatcatcagtgcgg 14486
to top
>gb|AC119618.4| Homo sapiens X BAC RP11-430A19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 76836

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   atgatgggacaaactgaagt 137
             ||||||||||||||||||||
Sbjct: 74666 atgatgggacaaactgaagt 74685
to top
>emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chromosome 1, complete
             sequence
          Length = 91356

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    agaagaagaaatcaacaaag 69
             ||||||||||||||||||||
Sbjct: 45236 agaagaagaaatcaacaaag 45255
to top
>gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, complete sequence
          Length = 121016

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   caaacaaaaagtgatgatgg 124
             ||||||||||||||||||||
Sbjct: 54378 caaacaaaaagtgatgatgg 54397
to top
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aagaagaagaaatcaacaaa 68
              ||||||||||||||||||||
Sbjct: 755585 aagaagaagaaatcaacaaa 755566
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       acacaacatttcatgatgag 30
                ||||||||||||||||||||
Sbjct: 19699362 acacaacatttcatgatgag 19699381
to top
>gb|AC090111.1|AC090111 Homo sapiens chromosome 21 clone unknown, complete sequence
          Length = 136653

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    aatataaactccagaaagac 246
              ||||||||||||||||||||
Sbjct: 105863 aatataaactccagaaagac 105844
to top
>gb|AC026776.4|AC026776 Homo sapiens chromosome 21 clone CTC-304G18, complete sequence
          Length = 136653

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    aatataaactccagaaagac 246
              ||||||||||||||||||||
Sbjct: 105863 aatataaactccagaaagac 105844
to top
>dbj|AP000031.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 2/28, complete
             sequence
          Length = 149298

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   aatataaactccagaaagac 246
             ||||||||||||||||||||
Sbjct: 74847 aatataaactccagaaagac 74866
to top
>dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22, map 22, complete
             sequences
          Length = 173403

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   aatataaactccagaaagac 246
             ||||||||||||||||||||
Sbjct: 21097 aatataaactccagaaagac 21116
to top
>dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13, map 22, complete
              sequences
          Length = 172432

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    aatataaactccagaaagac 246
              ||||||||||||||||||||
Sbjct: 151237 aatataaactccagaaagac 151256
to top
>gb|AY111604.1| Zea mays CL11280_1 mRNA sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 267 ggagtggcagcaaataaacggcatccac 294
           |||||||||||| || ||||||||||||
Sbjct: 287 ggagtggcagcagatgaacggcatccac 314
to top
>emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3225F7 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171535

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    attccaaacaaaaagtgatg 120
              ||||||||||||||||||||
Sbjct: 146772 attccaaacaaaaagtgatg 146753
to top
>gb|AC154135.3| Tribolium castaneum  BAC T.cast_C40D19 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 130926

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    agcaattccaaacaaaaagt 116
             ||||||||||||||||||||
Sbjct: 37048 agcaattccaaacaaaaagt 37029
to top
>dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, section 55/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    aatataaactccagaaagac 246
              ||||||||||||||||||||
Sbjct: 321853 aatataaactccagaaagac 321872
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       acacaacatttcatgatgag 30
                ||||||||||||||||||||
Sbjct: 19625576 acacaacatttcatgatgag 19625595
to top
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133659

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    acacaacatttcatgatgag 30
             ||||||||||||||||||||
Sbjct: 27631 acacaacatttcatgatgag 27612
to top
>gb|AY210783.2| Nodularia spumigena strain NSOR10 putative heat transcriptional
             repressor protein, putative beta-carotene ketolase,
             putative high light inducible protein, putative
             transposase, NdaB (ndaB), NdaA (ndaA), NdaC (ndaC), NdaD
             (ndaD), O-methyltransferase NdaE (ndaE), NdaF (ndaF), NdaG
             (ndaG), NdaH (ndaH), ABC transporter NdaI (ndaI), and
             hypothetical proteins, complete cds
          Length = 54353

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gagtggcagcaaataaacgg 287
             ||||||||||||||||||||
Sbjct: 14720 gagtggcagcaaataaacgg 14739
to top
>gb|AC171737.2| Monodelphis domestica clone VMRC6-60O3 map human ortholog 11q13.4,
             complete sequence
          Length = 131794

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ccaaacaaaaagtgatgatg 123
             ||||||||||||||||||||
Sbjct: 43747 ccaaacaaaaagtgatgatg 43766
to top
>dbj|AP000254.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:S322, complete sequence
          Length = 25737

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   aatataaactccagaaagac 246
             ||||||||||||||||||||
Sbjct: 14731 aatataaactccagaaagac 14750
to top
>dbj|AP000213.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 11/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   aatataaactccagaaagac 246
             ||||||||||||||||||||
Sbjct: 34841 aatataaactccagaaagac 34860


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,923,376
Number of Sequences: 3902068
Number of extensions: 3923376
Number of successful extensions: 60948
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60809
Number of HSP's gapped (non-prelim): 139
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top