Clone Name | rbastl53h05 |
---|---|
Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/26 (84%), Positives = 23/26 (88%) Frame = -2 Query: 390 LYPNTSDHTGQAEGLTARGIPNSISI 313 LYPNTSDH G A GLTA+GIPNSISI Sbjct: 837 LYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/26 (76%), Positives = 24/26 (92%) Frame = -2 Query: 390 LYPNTSDHTGQAEGLTARGIPNSISI 313 ++PNTSD+ G AEG+TARGIPNSISI Sbjct: 838 MFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/26 (80%), Positives = 23/26 (88%) Frame = -2 Query: 390 LYPNTSDHTGQAEGLTARGIPNSISI 313 LYPNTSD TG A G+TA+GIPNSISI Sbjct: 841 LYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 44.3 bits (103), Expect = 7e-05 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = -2 Query: 390 LYPNTSDHTGQAEGLTARGIPNSISI 313 LYPNTSD G A GL+ARGIPNSISI Sbjct: 845 LYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Frame = -2 Query: 390 LYPNTSDHTGQ-AEGLTARGIPNSISI 313 LYPNTSD T + +GLTA GIPNSISI Sbjct: 851 LYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T H EGLT RGIPNSISI Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.63 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T H EGLT +GIPNSISI Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 30.8 bits (68), Expect = 0.82 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T + EGLT RGIPNSISI Sbjct: 843 PYTLLYPSSEEGLTCRGIPNSISI 866
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T + EGLT RGIPNSISI Sbjct: 816 PYTLLYPSSEEGLTFRGIPNSISI 839
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T + EGLT RGIPNSISI Sbjct: 830 PYTLLYPSSEEGLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 384 PNTSDHTGQAEGLTARGIPNSISI 313 P T + EGLT RGIPNSISI Sbjct: 838 PYTLLYPSSKEGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -2 Query: 390 LYPNTSDHTGQAEGLTARGIPNSISI 313 L+PN+ EGLT RGIPNSISI Sbjct: 847 LHPNS-------EGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -2 Query: 366 TGQAEGLTARGIPNSISI 313 T + EGLT RGIPNSISI Sbjct: 845 TCEDEGLTFRGIPNSISI 862
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 354 EGLTARGIPNSISI 313 EGLT RGIPNSISI Sbjct: 844 EGLTFRGIPNSISI 857
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 384 PNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVCVCDR 220 PN + HT Q AE A+ +P S S R L LC P + P AC +C+ Sbjct: 59 PNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKLLCET 118 Query: 219 ELCRCMNN 196 CM N Sbjct: 119 VRGECMEN 126
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 385 PKHLRPHGTGRGAHRQGHPE 326 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 385 PKHLRPHGTGRGAHRQGHPE 326 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -2 Query: 354 EGLTARGIPNSISI 313 EGLT +GIPNS+SI Sbjct: 846 EGLTGKGIPNSVSI 859
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 324 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 160 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 159 GMRKL 145 G+R L Sbjct: 304 GLRSL 308
>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4| Length = 520 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 36 KNNGGPEGTSHHRLHYWAKQ 95 K+ GGP G S HR+ W +Q Sbjct: 169 KSTGGPSGRSGHRMVAWKRQ 188
>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 797 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -2 Query: 150 KLSSAGYRTMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVI 1 KL + GY H R +VL N D + +R F SW SG++V+ Sbjct: 87 KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVL 143
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 240 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRTMHRRVQK 103 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 346 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 260 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 452 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 36 KNNGGPEGTSHHRLHYWAKQGIFS 107 K GGPE + H + YW K + S Sbjct: 303 KIQGGPEIQNSHSMRYWKKSAVIS 326
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 240 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRTMHRRVQK 103 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 145 ELPHADQTRRARTLIALIIHAPAQLSV 225 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,620,781 Number of Sequences: 219361 Number of extensions: 1253307 Number of successful extensions: 3061 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3054 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)