>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 162 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 299
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 596 HCNAGYRSHPQHRYCVDVNECEAEPCGPGKGICMNTGGSYNCHCNR 641

>POLN_FCVC6 (P27407) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1762

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 183 NVTHNC-----RVGQEAWRLTAFPALHHVVRINVCFFFSFCLRRFKSL 55
           ++TH C     ++  ++ RL   PA  HVV +N  F  ++ LRR  +L
Sbjct: 779 DLTHLCHFIKGKIVNDSVRLDELPANQHVVTVNSVFDLAWALRRHSTL 826

>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1302

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 162 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 299
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 599 HCNPGYRSHPQHRYCVDVNECEAEPCGPGRGICMNTGGSYNCHCNR 644

>POLN_FCVUR (Q66914) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1763

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 183 NVTHNC-----RVGQEAWRLTAFPALHHVVRINVCFFFSFCLRRFKSL 55
           ++TH C     ++  ++ RL   PA  HVV +N  F  ++ LRR  +L
Sbjct: 780 DLTHLCHFIRGKIVNDSVRLDELPANQHVVTVNSVFDLAWALRRHLTL 827

>L_EBOSM (Q66802) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2210

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 67   PSEAKGKKKANINTYNMMKSGEGRKPPGLLSNTTIMGHVPTRDMKIVQ 210
            P +  G  KA    + ++  G   +PPGL  N +    +PTR  +IVQ
Sbjct: 1648 PKKTIGATKATTAPHIILPLGNSDRPPGLDLNQSNDTFIPTRIKQIVQ 1695

>SDC4_RAT (P34901) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 202

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 242 LDYLAVPRALPKLQMPLHTLTNHLPEN 322
           LD    PR  P++  PL  L NH+PEN
Sbjct: 70  LDDTEEPRTFPEVISPLVPLDNHIPEN 96

>COQ5_MOUSE (Q9CXI0) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 377 RVCQKKGWKATSSCRQHDCSRGDDW 303
           RVC +  W+AT  CR   C R   W
Sbjct: 11  RVCGRGWWRATGHCRLPGCHRSWPW 35

>YDN1_SCHPO (P87293) Hypothetical protein C16A10.01 in chromosome I|
          Length = 830

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 55  KTFEPSEAKGKKKANINTYNMMKSGEGRKPPGLLSNTTIMGHVPTRDMKIVQ 210
           ++F  +        N  TYN++       P   +S  T M H P+   K++Q
Sbjct: 218 QSFNSASRSSSISGNQYTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQ 269

>SDC4_MOUSE (O35988) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 198

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 242 LDYLAVPRALPKLQMPLHTLTNHLPEN 322
           LD    PR  P++  PL  L NH+PEN
Sbjct: 67  LDDTEEPRPFPEVIEPLVPLDNHIPEN 93

>SYL_COREF (Q8FLM0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 957

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 192 GHEDCAALSSLEPFPFALTIWLFLELYRSY 281
           GH+   A++S +P  +  T W+FL+++ S+
Sbjct: 147 GHDPRRAVASTDPEFYKWTQWIFLQIFNSW 176

>OSBL3_MOUSE (Q9DBS9) Oxysterol-binding protein-related protein 3 (OSBP-related|
           protein 3) (ORP-3)
          Length = 855

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = -1

Query: 353 KATSSCRQHDCSRGDDWXXXXXXXXXXVELEEQPDSQG----KRKW 228
           ++TSSC     SR D W             +E P  +G    KRKW
Sbjct: 18  RSTSSCSSKQGSRQDSWEVVEGLRGEMTYTQEPPVQKGFLLKKRKW 63

>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 241 AKGNGSREDSAAQSSCPVLERDP 173
           A+G GS EDS+  SS P+ + +P
Sbjct: 151 ARGTGSGEDSSTSSSTPLEDEEP 173

>STE11_YEAST (P23561) Serine/threonine-protein kinase STE11 (EC 2.7.11.1)|
          Length = 738

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 55  KTFEPSEAKGKKKANINTYNMMKSGEGRKPPGLLSNTTIMGHVPTRDMKIVQR 213
           K    + A+GK + +    + ++    ++PP    +T + G+ P  DMK +Q+
Sbjct: 271 KGISHNNAEGKLRIDNTEKDRIRQIFNQRPPSEFISTNLAGYFPHTDMKRLQK 323

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  PDTSSRRLLNRRRQKEKKKQ 97
           P+ + RRLL  RRQK+ KKQ
Sbjct: 345 PEKACRRLLEGRRQKKTKKQ 364

>SYL_STRAW (Q82C66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 962

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 RSNTGHEDCAALSSLEPFPFALTIWLFLELYRSY 281
           R   GH+   + ++++P  +  T W+FL+++ S+
Sbjct: 141 RLGLGHDKRRSFATIDPDYYKWTQWIFLQIFNSW 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,808,693
Number of Sequences: 219361
Number of extensions: 1114640
Number of successful extensions: 2548
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2548
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)