Clone Name | rbastl53h04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 258 ttcctcgagctctaccgaagctacagatgccactgca 294 |||||| | |||||| |||||||||||||||| |||| Sbjct: 29114508 ttcctcaatctctactgaagctacagatgccagtgca 29114472
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 258 ttcctcgagctctaccgaagctacagatgccactgca 294 |||||| | |||||| |||||||||||||||| |||| Sbjct: 74874 ttcctcaatctctactgaagctacagatgccagtgca 74838
>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence Length = 160118 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gaaccatttccttttgccttg 245 ||||||||||||||||||||| Sbjct: 85929 gaaccatttccttttgccttg 85949
>ref|XM_513613.1| PREDICTED: Pan troglodytes similar to KIAA0893 protein (LOC457082), mRNA Length = 3124 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2142 agctacagatgccactgcac 2123
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aggccgtaagccgccaggcc 151 |||||||||||||||||||| Sbjct: 119940 aggccgtaagccgccaggcc 119921
>ref|XM_864695.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 2 (LOC512354), mRNA Length = 4226 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2680 agctacagatgccactgcac 2661
>ref|XM_589861.2| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 1 (LOC512354), mRNA Length = 3883 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2337 agctacagatgccactgcac 2318
>ref|XM_873788.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 3 (LOC512354), mRNA Length = 4186 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2640 agctacagatgccactgcac 2621
>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence Length = 171059 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tctcttgaaccatttccttttgcc 242 ||||||||||||||||||| |||| Sbjct: 71165 tctcttgaaccatttccttgtgcc 71142
>ref|NM_014969.3| Homo sapiens WD repeat domain 47 (WDR47), mRNA Length = 4259 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2685 agctacagatgccactgcac 2666
>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the TAF13 gene for TAF13 RNA polymerase II TATA box binding protein (TBP)-associated factor 18kDa, a RAN member RAS oncogene family (RAN) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of a novel gene (KIAA0893) and three CpG islands, complete sequence Length = 107685 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 3053 agctacagatgccactgcac 3072
>gb|BC034964.2| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714 IMAGE:4823902), complete cds Length = 4259 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2685 agctacagatgccactgcac 2666
>gb|BC039254.1| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:33742 IMAGE:5287954), complete cds Length = 4181 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2593 agctacagatgccactgcac 2574
>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 238147 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctaaaacacttgaccagata 44 |||||||||||||||||||| Sbjct: 224012 ctaaaacacttgaccagata 224031
>emb|BX936335.6| Zebrafish DNA sequence from clone CH211-287C12 in linkage group 3, complete sequence Length = 62086 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 taatacgtacaacatgatga 121 |||||||||||||||||||| Sbjct: 8861 taatacgtacaacatgatga 8842
>gb|AF454824.1| Enterococcus faecalis pathogenicity island, complete sequence Length = 153571 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 16379 tctagcaataaagaacaaac 16398
>dbj|AK074616.1| Homo sapiens cDNA FLJ90135 fis, clone HEMBB1000668 Length = 2375 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 824 agctacagatgccactgcac 805
>gb|AF343839.1|AF343839 Enterococcus faecalis strain OG1X plasmid pAD1 conjugation protein gene, complete cds; and unknown gene Length = 1892 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 1563 tctagcaataaagaacaaac 1582
>ref|NM_031320.1| Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 3 (Celsr3), mRNA Length = 11868 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 acttgaccagatacaagctctaga 55 |||||||||| ||||||||||||| Sbjct: 4977 acttgaccagctacaagctctaga 4954
>gb|AE002565.1|AE002565 Enterococcus faecalis plasmid pAM373, complete sequence Length = 36804 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 26979 tctagcaataaagaacaaac 26960
>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10, complete sequence Length = 212133 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 actctagcaataaagaacaa 392 |||||||||||||||||||| Sbjct: 98991 actctagcaataaagaacaa 99010
>dbj|AB020700.1| Homo sapiens mRNA for KIAA0893 protein, partial cds Length = 4195 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agctacagatgccactgcac 295 |||||||||||||||||||| Sbjct: 2644 agctacagatgccactgcac 2625
>emb|X96977.1|EFPAD1ORF E.faecalis plasmid pAD1, open reading frames Length = 7557 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 4279 tctagcaataaagaacaaac 4298
>gb|AF118228.1|AF118228 Mus musculus Ksp-cadherin gene, promoter region and partial cds Length = 4884 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gctacagatgccactgcaca 296 |||||||||||||||||||| Sbjct: 3421 gctacagatgccactgcaca 3440
>gb|AE016833.1| Enterococcus faecalis V583 plasmid pTEF1, complete sequence Length = 66320 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 30608 tctagcaataaagaacaaac 30589
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctagcaataaagaacaaac 394 |||||||||||||||||||| Sbjct: 458667 tctagcaataaagaacaaac 458686
>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence Length = 204919 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gctacagatgccactgcaca 296 |||||||||||||||||||| Sbjct: 149203 gctacagatgccactgcaca 149184
>dbj|AB011528.1| Rattus norvegicus mRNA for MEGF2, complete cds Length = 11868 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 acttgaccagatacaagctctaga 55 |||||||||| ||||||||||||| Sbjct: 4977 acttgaccagctacaagctctaga 4954 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,957,472 Number of Sequences: 3902068 Number of extensions: 2957472 Number of successful extensions: 46358 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46293 Number of HSP's gapped (non-prelim): 65 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)