>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 293 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 138
           +  E+++ V R   + R+ + LLW     +L    TYW DF  ++  L R IRS
Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252

>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 173 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 57
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199

>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +1

Query: 64  VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 222
           + +SY TG +N    +Y+  WQ+  D +++      C  S Q +       L    S++ 
Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290

Query: 223 NGQSNRSQSLNLKRQTVSMFSA 288
           N QS    S NL  + V   SA
Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312

>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +1

Query: 64  VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 222
           + +SY TG +N    +Y+  WQ+  D +++      C  S Q +       L    S++ 
Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290

Query: 223 NGQSNRSQSLNLKRQTVSMFSA 288
           N QS    S NL  + V   SA
Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312

>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 7   NIMLICRETNNRKTTTHLHVSASYRTGLINCGHST 111
           N  ++C   NN++ TT  H+S +    L+   H T
Sbjct: 231 NSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHET 265

>BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase|
           (EC 2.6.1.62) (7,8-diamino-pelargonic acid
           aminotransferase) (DAPA aminotransferase)
          Length = 423

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 45  DNYTLTRICELQNRTHQLWPFHL*IQV-----AIIGRPNQSTKKCLQMLKILPVRTLYS* 209
           D +T   +C+ +N  H LW   L  Q+      + G   Q+  + L+ +++L   T+ + 
Sbjct: 147 DTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLRSMELLIDETVSAI 206

Query: 210 ILSP 221
           I+ P
Sbjct: 207 IIEP 210

>GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5)|
          Length = 382

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 53  HTYTYLRATEQD-SSTVAIPLINTSGNYRTTESIYKEMPPD 172
           H YT+  A     S  +  P+I ++GNY T E I K   PD
Sbjct: 98  HVYTHEAAGLAILSQAMVTPVIPSNGNYLTLEDIKKHYIPD 138

>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
           (153 kDa nucleoporin)
          Length = 1468

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 326 CTCSTTSDEMPRSAENME 273
           C+CS  +DE+PR  EN E
Sbjct: 67  CSCSVNADEVPRWPENRE 84

>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   DENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 117
           D+N+    R+T+  K T  LH    Y  G ++ GH+  K
Sbjct: 34  DKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,076,481
Number of Sequences: 219361
Number of extensions: 946967
Number of successful extensions: 2388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2388
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)